Ctenopharyngodon idella (grass carp): 127498149
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Entry
127498149 CDS
T08802
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04140
Autophagy - animal
cide04148
Efferocytosis
cide05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127498149
04148 Efferocytosis
127498149
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
127498149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cide04131
]
127498149
Membrane trafficking [BR:
cide04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
127498149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_WDR35_2nd
Motif
Other DBs
NCBI-GeneID:
127498149
NCBI-ProteinID:
XP_051723107
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Position
17:complement(29939171..29981398)
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AA seq
875 aa
AA seq
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MHDAYEPVPILEKLPLQIDCLAAWDDWLLVGTKPGHLLQYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLFVVSQYKILVSLLENNIHVHDLLTFQQITVVSKARGATLFACDLQKSSSGE
AKLRMCVAVKRKIQLYYWKDREFHELQGDFAAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGTVKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTLEPRLLVQSVELQRPRFITSAGSNVVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLAKMKDDSDADKRQQIHHIQNLYAFNLFCQKRFDDSMQGFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPALSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGVENLG
IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAIPYLEHIIYMWE
ETRPEFHNVLIQLYLEKVQGLMKVYLNSLPEGVSAVAAGKEAGELGEFRNKLLTFLEVSS
SYEPERLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHSHYDLTAN
GNKDVYLSLLRMYLSPPDVHFLGPIKMELCEPQANLQAALNVLQLHHSKLNTTKAINLLP
ANTQIREIKVFLENVLEEKAGRKRFDQVMKSLLQAEFLRVQEERIFHQQVKCVITDEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRSMCPAE
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcatatgaaccggttcctattctggagaaattacccctgcagattgactgt
ctggcggcatgggatgattggctccttgtcgggaccaaaccgggtcatctccttcagtac
aggatcaagaaagatgcaggcacaaataggtttgaagttacattagagaaatccaataag
aacttctcaaagaagattcagcagctgtttgtggtttcgcagtacaagattttggttagt
cttttggaaaataacatccacgttcatgacttgctgacgttccagcagataactgtggtg
tccaaagccagaggggccacactgtttgcctgtgacctgcagaagtccagctcaggtgag
gccaaactgcgcatgtgtgttgcagtcaagaggaagattcagctgtattactggaaggac
agagaattccatgaattacagggagattttgccgctccagacattcccaagtccatggct
tggtgtgagaactctatatgcgtgggtttcaaacgagactactatctgattcggatggac
ggacgtggcacagtcaaggaactgttccccacggggaaacagctggaaccattggtggcc
ccattggctgatgggaaggtagcggtgggtcaggatgacctcacggttgttttgaacgaa
gaaggtgtctgcactcagaaatgtgcccttaactggacagacattcctgttgcaatggag
caccagccaccgtacatcattgcagtgttgccacggtatgtggagatccgcaccctcgag
cccagactgctggtgcagagcgtagagctgcagagaccacgtttcatcacctctgctgga
tcaaatgttgtctatgtcgctagcaatcattttgtttggcgtctggtgccggtctctata
gccagccagatacggcagctgctacaggacaaacagtttgaactggcgcttcagctagcg
aaaatgaaggatgattcagatgcagacaagagacaacagatccatcacattcagaacctg
tatgccttcaacctgttctgtcagaagcgctttgacgactccatgcaggggtttgccaag
ttaggcacagatcccactcatgttataggactgtatccagacctccttccctctgattac
cgcaaacagctgcattaccccaaccctctgcccgcactgtctggagccgagctggagaaa
gcccacctagcactcatagactacctgacacagaaacgcagtcatttagtgaagcagctg
aatgactctgacccctctaccacctcccctctcatggagggaacccccaccatcaagagc
cgcaagaaactccttcagatcatcgataccaccctgctcaaatgttacctccataccaat
gtagccttggtgtcgcctctcctgcgcctggagaacaaccactgtcacatagaggagagc
gagtacgtgttaaagaaagctcataaatacagcgaactcatcatcctctacgagaagaaa
ggccttcaccagaaagctctgcaggttctgctggatcagtctactaaagccaactctccc
ctgaagggacatgagaggactgtacagtatcttcagaggctgggtgtggagaacctgggc
atcatatttgagttttcaccgtgggttctgaagatttgtcccgaggatggactgaagatc
ttcactgaggacctgacagaggtggagactctacccagggataaggtattgaacttcctg
aaggaggggttcaaggagctggccatcccatacctggaacacatcatttacatgtgggaa
gagacacggcccgagttccacaatgttctgatccagctgtacctggagaaggtgcaaggc
ctcatgaaagtgtacctcaactcactgcctgaaggtgtttcagctgtagctgcaggaaag
gaggcgggagagctgggagaattcaggaacaagcttctgacatttctggaagtttccagc
agctatgagccagagagactcatcagtgatttcccatttgatggtctgttggaagagagg
gctctgctcttgggtcgtatggggaaacatgagcaggctctcttcatctatgttcacatt
ctgaaagacacgcgtatggctgaagagtactgccacagtcattatgatctaacagcaaac
ggcaataaagatgtgtatctgtccctcctgcgcatgtatctgtctcctccggatgtgcac
ttcctcggccccattaagatggagttatgtgagccacaagcgaacctccaggcggccctg
aacgttcttcagctccaccacagcaaactgaacaccaccaaagccataaacctgctgcca
gccaacacacagatccgcgagatcaaggtcttcctggagaatgtgttggaggagaaggct
ggaaggaagcgctttgaccaggtcatgaagagcctcctacaggctgagttcctgcgggtg
caggaggaacgtatctttcaccagcaggtgaagtgcgtcatcacagatgaaaagacctgc
agagtgtgcaagaagaagatcggaaatagtgcctttgccaggtatccaaacggtgtggtg
gttcactacttctgctgtaaagatcgcagcatgtgtccagcagagtag
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