Ctenopharyngodon idella (grass carp): 127498592
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Entry
127498592 CDS
T08802
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127498592
03041 Spliceosome [BR:
cide03041
]
127498592
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127498592
Spliceosome [BR:
cide03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
127498592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
127498592
NCBI-ProteinID:
XP_051724077
LinkDB
All DBs
Position
17:31153558..31200465
Genome browser
AA seq
1283 aa
AA seq
DB search
MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSKNIISTFQNLYRCPTDDKSKIVRVLNLWQKN
NVFKSDIIQPLLDMAAGLPPPSVTPVSASSAVPVNSTTPGTPATPATPANIVQSLPDWAS
QISNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAAANTLNPLEQRVSSFNKKLLGQFDFGNESEHSEDSKKDATSSQLPVVSDSINSSIF
HQLAEHLQQQNLEQFQKQLMEHQQHQQKSMTMENQDAIFGPESSAPPGQSSAPPQLPEQE
AKMDDSIDNQQQDMDIDEGQDTVDEELFEAEEKKTSSTRSRTRSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKVLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRALQKLSTGSYKIG
SKVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDDFAEGGMIDQETVNNEWE
SQRNTETAKETQSQAVTAETSTTSSTPSEAFTQPVTMMPMQIPVAQTVSAVGLVPPSFPV
TMAVPPPGFGPPPPFLRAGFNASQPPPGFMATPGVGPSAVGTSLASAQTSLVQPSLPTTQ
ENSKDSPFGAMIPPTSTIPGSFMPSAMPGAGVFNPVGAQHQQSSTDKPPQSAETMEAASE
ITLQGMQNAVRSGMGLLGMHPSASLTHPLSGQRMAGLLPLELRPNLLQGPGGRFPLLMQP
GLAHQANNILDASLQAQARVRVPFSQMEQFNRAEGTFARAPNPSSAGPDSLAKANNETPP
RSDVGGQQEGDQDYRFPPPEKQSTGLLKTPPLEMRTEPVPARPPLLERPPRAVEGREGRR
ENMSGGFRTESRWGPPRGDFDERDMRGMSAGPPKGFQEERSNPNFQGRFDGRGGNSSGPA
WNRGTGPSFNANMHQDYDDRRRPWERQKDRDDRDMDFRGEMNGNRHSRERDRDRERERDR
NRDRERARERNRERERERDRERENEKDKERERWTPLSSQSQPQPLLPQPKSQPLLPLPTP
LLAQPQAQEQAQNNSPSLPAVPQHQPHTDPKPDAELQPEEKPESLSPPKESPSGQEQEEA
SFVNGTEADSKPQLNISEPASQTATEPSRSPSPSLTSTNEPSKEEKTPEMCVSSSVDADT
KQTGPKVNAETEPELEKTDTEET
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaggcgtttaacggcgagctgtactcactgaatgaatacaaaccacct
atctccaaagcaaagatgacccagattacaaaatctgcaataaaagctataaagttctac
aaacatgtggtccaaagtgtggagaaattcattcaaaagtgcaagccagagtacaaagtc
cctggtctgtatgtgatcgactccattgtacggcagtctcgtcaccagtttggtcaagag
aaagatgttttcgctccacgctttagtaagaacatcattagcacgttccaaaacctctac
cgctgcccgacggatgacaagagcaagattgtccgtgtactcaatctgtggcagaaaaac
aacgtctttaagagtgacatcatccagcctctactggatatggcagcagggctcccaccc
cccagtgtcacgcccgtctctgccagcagtgctgtacctgtcaacagcactactcctgga
actcctgcaactccagccactccagccaacatagtgcagagtctcccggactgggcgtca
cagatctccaacacagacacagtggcagcggttgcccagatcttacaaagtcctcagggc
cagcagttgcagcagctggttcagagcctgcagatgcagcagcagaagcctcagccatct
ctgcttcaggcgctggatgcaggtttggtggtgcagctgcaggccctgaccgcacagctc
actgcggccgcagcagccaataccctcaacccgctggagcagagggtttcctcctttaac
aagaagctgttgggtcagttcgatttcgggaatgagtcggaacacagcgaggattccaag
aaagatgctacgtcatctcagttacctgtggtgtcagattccatcaatagctcaatattt
catcagctggccgagcatcttcagcagcaaaaccttgagcagtttcagaaacagctaatg
gagcaccagcagcatcaacagaagtccatgaccatggagaaccaggatgccatctttggt
cctgaaagttctgcccctcctggccaaagcagtgccccaccacagctcccagaacaagaa
gcaaaaatggatgactccattgataaccaacaacaagacatggatattgatgagggacag
gatactgtagatgaggagctctttgaggctgaggagaagaaaaccagcagcacccgttca
aggacacgctcaagatctcggtccaggtcacctaagagaaggaggtcaagatctcgttca
gggtctcggaagcgcaaacacaggaagcgatcacggtctcgatcaagggacagaaagagg
aagtcctcccgttcttattccagtgagcgacgagcgcgggaaagagaaaaggaaaggcag
aaaaaaggacttcctcctatccgctcaaaggttcttagtgtttgcagcactaccctatgg
gttggtcaagtggacaagaaggccacccagcaagatcttactaaccttttcgaagagttt
ggccagattgaatctatcaatatgattcctcccagaggctgtgcttacatctgtatggtt
catcgtcaggatgcataccgtgctcttcagaaactgagcacaggctcctacaaaattggt
tcaaaggtcatcaaaatcgcttgggccctcaacaaaggggtgaaacaggaatacaagcag
ttctgggatgtggacctcggggtcacttatattccgtgggagaaggtcaaactggatgac
ctggatgattttgcagagggaggcatgattgaccaggagaccgtcaacaatgaatgggaa
tcacagaggaatactgagacggccaaagagactcagagtcaggctgttacagctgaaacc
agtacaaccagcagcacacctagcgaggccttcacacagcctgtcacgatgatgcccatg
cagattccagtggcacagacggtctctgctgttggccttgtgcctccatccttccctgtc
accatggcagtaccccctccaggctttggtcctcctccaccctttctgagggcagggttt
aacgcctcacagcctcccccaggttttatggccacaccaggagtaggaccatcagcagtt
ggaaccagtcttgcttcagctcagacatctctagtgcagccttcattgccaaccactcaa
gagaacagcaaggattctccgtttggagccatgattcctcccaccagtactattcctggg
agttttatgccatcagcaatgcctggggcaggagtctttaaccctgtgggagcacagcat
cagcagagcagcacagacaaacctcctcagtctgcagaaactatggaggccgcttctgag
ataacactacaaggaatgcagaatgcagtgcgcagtggaatgggtctgctgggtatgcac
ccctctgcatctctaacacaccctctctctggtcagaggatggcagggctgcttcccctg
gagctgcgacccaacctgctccagggacccggcggccgcttccccctgctcatgcagcca
ggtcttgctcatcaggccaacaacatcctggatgcctcacttcaagcccaagcccgtgtt
cgggttccattctctcaaatggagcaattcaaccgcgccgagggcacttttgcaagggcg
cctaacccctcatctgctgggcctgacagtttggccaaggccaataatgagacaccaccc
aggtcagatgtaggtggccaacaagagggagatcaggactatcgctttccaccaccagaa
aagcagagcacgggcttgttgaagacccctcctttggagatgcgtactgagcctgtgcct
gccagaccccctttactagaacgacctccaagagcagttgagggtcgagaaggtagaaga
gaaaacatgtcaggagggttcagaacagaaagtcgctgggggccacccaggggggacttc
gatgagcgagacatgaggggcatgtctgctggacctccaaagggtttccaggaggagcgc
tccaaccctaattttcagggtcgttttgacggccgtggtggaaattcatcaggacctgct
tggaatcgtggaaccgggccttcttttaacgccaacatgcaccaggactacgacgatcgt
cgcagaccttgggaaaggcagaaggaccgagacgacagggacatggacttcaggggcgaa
atgaacggcaaccgccatagccgagagcgagacagagatcgcgaaagggagagggacagg
aatcgggaccgcgaacgagccagagagcgcaatcgtgagagagaacgagagcgcgacagg
gagagggagaacgagaaggacaaagagcgggaacgctggactcccctttcttcgcaatct
cagcctcaaccgctgcttcctcaacccaaatctcagccgcttctccctcttccgaccccc
ctgctcgctcagcctcaagcacaggaacaagcgcaaaataactcgccatctctgccagcg
gtgccccaacaccagcctcacactgacccgaaaccagatgctgaactgcaaccagaggag
aaaccagagtcactcagcccccctaaagagtcgccaagtggtcaagagcaggaggaagct
tcatttgtcaacggaacggaggcggattcaaaacctcaattaaacatttcggagcccgcg
tcccagactgctacagagccctctcgtagcccctctccatccctcacctccacaaatgag
ccctcgaaggaagagaagaccccagaaatgtgtgtttcctcatctgtggatgcagacact
aaacagactgggccaaaggtgaacgctgagactgaacctgagctagagaaaactgacact
gaggaaacataa
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