Ctenopharyngodon idella (grass carp): 127498775
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Entry
127498775 CDS
T08802
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cide04121
]
127498775
Enzymes [BR:
cide01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127498775
Ubiquitin system [BR:
cide04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
127498775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4
PHD
zf-RING_2
TPR_10
zf-C3HC4_2
TPR_12
GCN5L1
PHD_5
Motif
Other DBs
NCBI-GeneID:
127498775
NCBI-ProteinID:
XP_051724469
LinkDB
All DBs
Position
17:2201507..2218529
Genome browser
AA seq
1650 aa
AA seq
DB search
MSSRRKRAPPVRMDEEAKRRVEWNMLEDRRNEGDCEDIQESIPAPSDSCQPGPVIESSQE
EESQCFISSAGTEEGPSEEHPSCSIKDSLPDTIELNVMPLSALEQGWNALIGEFNLYPKI
PFVLGDDSFCLQQTGDTLTLRLNSDELEVETGRSDPVCPVPIECSFGGKLLEDLDWLQKR
KVIKLCHASGDVSVKLKIFLLESGLGRPEFLSEGNGRIKKASQLLQKLMELFHDFVIPEV
MENEEEECDTDLERQNVEELYDHVRHLHQTEAVEQSFDVQHPGLIPVLRPYQSQAVSWML
RREKYKSSTTQEQRLHFLWREMVTICGKKLFYNPYTGCLIREFPLAGVDWPGGILADEMG
LGKTVEVLALILCNTRQNLEHGVLTLPVGRSVNYFVPPPPLERQRTIKHEVRPKEKIIYP
AVREMLLTAIKEMKVGKGASINAIFAYLRTMYKYDTLKNRNHIKKILTKLISENIVEQIK
GRGLAGSFKLGKNYKEKKKKPAAHRTKSFDKATPRRTSRRVSSQDKEASLTSYTTASDSE
DNVEPPLLTEELKCEPDSLLDAENPQQKTSVDITDEDDKETADKPQHKMTKNIHIESTES
DLTQNLKPELETPTRASVIPFNTSDYRFECICGELGLVDYKPRVQCLNCLLWQHAECVNY
KEENLETTPFYCPHCLVAMTPVSTGATLIISPSSICHQWVDEINRHIHTSSLRVLVYQGV
KRHGFIQPHILAEQDVVITTYDVLRTELNYVDIPHSNSKDGRRFRNQKRYMAIPSPLVAV
EWWRVCLDEAQMVECTTAKAAEMALRLTSVNRWCVSGTPVQRGLEDLYGLVLFLGVDPYW
VKYWWDQLLYRPYRHGNTGPLYNVIGQLLWRSAKKDVIDQIQIPPQTEEIHWLNFSPVEG
HFYHRQHEVCSQDALVKLRKISDWSLKLGSLDRRTVSTILYPLLRLRQACCHPQAVRGEF
LPLQKSTMTMEELLKSLQKKCRVECEEAHRQLVCALNGLAGIHIIRGEFADAAEMYREVL
RSSEEHKARLKTDSLQRLHATHNLMELLNAKHPGIPPTLRDDSLKEEAEQLKQHYMAKVN
SEVSEAHQNLQPVLQHIKELKRKVNLRSPWWLDVIQQAIQYSMDDDLVGRIQNELTCSYK
QQANKLSLADKFRDARGLQFLLSTQMDDLMKSQKTVQDAVKKLEGPPSQQVIEEATLCHL
RPVRLPLNNCVFCKADELFTDYESKLFSHTVKGQTAIFEEMIEDEDGLVDDRLPTTSRGL
WAASETERALKAILSFAKVRRIESGLIEEGSSFMELFESWKKEYKLLHEYWMSLRDHVSA
IDELGMATERMRVRLPDEPKPKVLHIIEPHEVEQNRIKLLNDRAVAKSQLQKKLGQFLYL
TNLEKSQDKSTGGLNPEPCPICARPLGQEWAVLTCGHCFCNGCIAIIVEQYSVGNRRRAI
KCAICRQTTSHSEISYVFTTQSAHQGQDIPVKGSHSTKVEAVVRVLKKIQMTNPGAKSLV
FSTWQGVLDIIAKALFDNNMEFAQINGIHKFQENLSAFKYEDKINILLLPLHTGSNGLNI
IEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTFVHRFLIKSTIEERMQAMLKTAEKSH
SSTSMKHSEASVFTVADLAELFTEDSEALE
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaggaggaaacgcgcgccgccggtgcgcatggacgaggaggccaagaggaga
gtggagtggaatatgcttgaagatcggagaaatgaaggagattgtgaagacattcaggag
tcaatcccagcaccgtcagacagctgtcaacctggaccagtgattgagagcagccaggaa
gaggaaagccagtgttttatatcttctgcaggcacagaagaaggaccatcagaagagcat
ccaagctgctccataaaggattctcttcctgataccatagaactgaatgtcatgcctctt
tctgctctcgaacagggatggaatgcgctgattggagagtttaacctgtatccaaagatt
ccttttgtgcttggagacgattccttctgcctgcagcaaacaggtgacacactaactttg
agactgaatagtgatgaattggaggttgagacgggcagaagtgatcctgtctgtcctgtg
ccgattgaatgttcctttggtggaaaattgttggaggatctggattggctacaaaagaga
aaggtcattaaattgtgccatgcttcaggagatgtatcagtgaagctgaaaatttttctt
ctcgaatccgggttgggcagaccagaattcctcagtgaaggaaatgggcgcattaaaaaa
gccagtcagcttctgcagaaattaatggaattgtttcatgacttcgtcatccctgaggtg
atggagaatgaagaggaggagtgtgacactgatctggagcgtcagaacgttgaggagctg
tacgatcatgttagacacctccaccagacagaagcagtggagcagagcttcgacgtccag
caccctggcctcatacctgtgctgagaccctatcagagtcaggcggtcagctggatgctg
aggagagagaagtacaaaagcagcaccactcaagagcaaaggttgcattttctttggagg
gaaatggtcacgatttgtggcaaaaaactcttttacaatccctacaccggatgcttgatc
cgagagtttcctcttgctggtgtggactggcctggcgggatccttgctgatgagatgggg
cttgggaaaaccgtggaagtactggcccttattctgtgtaacacccggcaaaacctggag
cacggggttctcactttacctgtgggacgatctgtgaattactttgtccctcctccacca
ttagagagacaacgaaccattaaacatgaggtgagacccaaggagaagatcatttatcca
gctgttcgtgagatgctgttgactgcgatcaaggaaatgaaggttgggaaaggagcgtca
atcaatgccatttttgcatatttacggaccatgtacaagtacgacaccctaaagaaccgt
aaccacataaagaaaatcttgaccaaactcattagtgagaacattgtggaacagatcaaa
ggacgagggctagcaggatccttcaaactggggaagaactacaaagaaaagaagaagaag
cccgccgctcatcgaactaaatcttttgacaaggccactccaaggagaacatctcgtcga
gtttcttctcaggataaagaggcatcgctgacctcttataccacagcttcagattctgaa
gacaatgttgaacctcctctcctgacagaggaactgaagtgtgagccagattcccttctg
gacgcagagaatccacaacagaagacgtcagtagacatcacagatgaagatgataaagaa
accgcagacaaaccccaacataaaatgacaaaaaacatccatatcgagagtactgaatca
gatcttacacaaaacttaaagcctgaactcgaaaccccaactagagcgtctgtgatcccg
tttaatacttcagattaccgcttcgagtgcatctgtggagagcttgggttggtggactat
aagccacgggttcagtgcctcaattgtctgctgtggcagcatgcagagtgtgtcaactac
aaagaggagaacctagaaaccactccgttttattgccctcattgcctggtggcaatgaca
cctgtgtctactggagccactcttatcatctcacccagctccatctgtcaccaatgggtg
gatgaaattaaccggcacattcatacttcctcccttagagtgctggtgtatcagggtgtg
aagagacatggtttcatccagccccacattctggcggagcaggatgtggtcatcaccact
tacgatgtgctgcgcactgaactcaattacgtcgacatcccccacagcaacagcaaagac
ggccgtcgattccgcaaccagaagcgctacatggccataccgagccctttagtggccgtg
gagtggtggcgtgtctgcttggatgaagctcagatggtggagtgcaccacagctaaggca
gcagagatggctttgcgtctcacatctgttaatcgttggtgtgtcagtggaacacctgtg
cagagaggtttggaagacttgtatggtcttgtcctgtttttgggagttgatccctattgg
gtgaagtactggtgggaccagttactctatcgcccgtaccgccacggcaatacaggacca
ctctacaatgtcattggtcaattactgtggcgatctgccaaaaaagatgtcattgatcag
atccaaatcccccctcaaacagaagagatccactggcttaacttctccccagtagaagga
cacttttaccaccgtcagcatgaggtttgctcccaggatgctcttgtaaagctaagaaag
atctctgactggtcactaaagttgggtagtttggaccgacgtaccgtctctaccatatta
taccctctcctgcgtctacgtcaggcctgctgccacccgcaagctgtcagaggagaattt
ctgcccctccagaagagcacaatgacaatggaggaattgttgaagtcattgcagaagaaa
tgtcgggtggagtgtgaagaagcccacaggcagctggtgtgtgctctaaatggtctggct
ggcatccacatcattagaggagagtttgcagatgcagcagagatgtacagggaagtgttg
cgatcatctgaagaacataaagcaagactgaaaactgattcccttcagaggcttcatgca
acccataatctgatggagcttctaaatgcaaagcatcctgggattcctccaaccctgaga
gatgacagtctcaaagaagaggctgagcagctgaagcagcattacatggcaaaggtgaat
tctgaggtttctgaagcacatcagaacctgcaacctgttcttcagcacattaaagagcta
aaacgcaaggtgaaccttcgctctccctggtggctggatgtcatacagcaggccattcag
tactccatggatgacgacctggtgggtcgcatccaaaatgagctcacttgcagctataaa
caacaagccaacaagctttcattggcagacaagtttcgagatgctcgtggtcttcagttt
ttgctcagcactcaaatggatgatttgatgaaatcacagaaaacggtccaggatgctgta
aagaagctggaggggccgccatctcagcaagtcatcgaggaagcgacactttgccacctg
cgacctgttcgtctgccactgaacaactgtgtgttttgcaaagctgatgaactttttacg
gactatgaatcaaaactgttctctcacacagtaaaggggcagacagccatctttgaggag
atgattgaagatgaggatggtctggtagatgacagactccccacgaccagtcgggggttg
tgggcggccagtgagacagaacgggcccttaaagccatcctgtccttcgccaaagtccgc
cgcatagagtctggccttatagaggagggaagctccttcatggagctctttgagtcctgg
aagaaagaatataagctgctgcatgagtactggatgtcactgcgggatcatgtgtcagcc
atagatgagctgggcatggccaccgaaaggatgcgtgtgcggttacctgatgagcccaaa
cccaaagtgctgcatatcatagaacctcacgaggtggagcagaacaggataaagctgctt
aatgatagggcagtggccaaatcacaactgcaaaaaaagcttgggcagtttctctatctc
acaaacctggaaaagtctcaggataagtccactggcggtctgaatccagaaccatgccca
atctgtgctcgaccgttgggtcaggagtgggccgtactgacctgtggacactgtttctgt
aacgggtgcatcgccatcatcgtggagcagtacagcgttggcaatcgacggagagctata
aagtgcgccatatgccgacaaaccacttcacattcagagatttcatatgtgttcaccact
cagagtgcccaccaggggcaggacatccctgtgaagggtagccactccacgaaggtcgag
gctgtggttcgagtcctaaagaaaatccagatgaccaacccgggagccaagtctcttgtg
ttctccacgtggcagggcgtcctggatatcattgcaaaagcccttttcgacaacaacatg
gagtttgcacagatcaacggaattcacaaatttcaggagaacctgagtgcttttaaatac
gaggataagatcaacatcttgctgttgccactgcacacgggctcaaacgggttgaacatc
atcgaggccacacatgtgctgctggtggagcccatcctaaaccccgcccatgagctgcag
gccattggaagagtgcatcggattggccagaccaaacccacatttgttcatcggtttctg
atcaagtccaccattgaggagcgaatgcaagccatgctaaaaacagcagaaaagagtcat
agctccacgtccatgaagcattcggaggcctccgtatttacagtggcagatctggccgag
ctgttcacagaggatagcgaggctcttgagtaa
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integrated database retrieval system
