Ctenopharyngodon idella (grass carp): 127498914
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Entry
127498914 CDS
T08802
Name
(RefSeq) homeobox-containing protein 1a isoform X1
KO
K24885
homeobox-containing protein 1
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cide03000
]
127498914
Transcription factors [BR:
cide03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
127498914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
DUF494
HTH_37
HTH_31
CUT
HTH_24
NOC3p
HTH_26
Motif
Other DBs
NCBI-GeneID:
127498914
NCBI-ProteinID:
XP_051724833
LinkDB
All DBs
Position
17:27275700..27293675
Genome browser
AA seq
447 aa
AA seq
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MSHYTDEPRFTIEQIDLLQRLRRSGMTKQEILHALDTLDRLDREHVEKFGHRHAHGGSGA
AGVNHGNGSNATTSSNSCTTSTNNLAASSSTTSTATQTGYRGNGLSPSPSNSYDTSPPPM
VPTPMPVVAPMVQNGREGLASMPNGKLSPPRFAVSNASSRAFAIENPDEEVDIDDKVEEL
MRMDSAIIKEEIKAFLGNRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWY
QLEKTTPGATLAMRPTPMALEDIVEWRQTPPPISSTQGSFRLRRGSRFTWRKECLAVMES
YFNDNQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIE
AAILESHGIDVQSPGGHSNSDEIDGNDYGEPVAADQVLGMDDNAGPNEHQDPIALAVEMA
AVNHSILALARQGGATSDIKTEVLDDE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtcccattatacagatgagcctcgttttaccattgagcagatcgacttgctgcagcga
ctacgtcgaagcggcatgacaaagcaagagatcttgcacgccctggacaccctcgaccgg
ctggaccgcgagcacgtggagaagttcggccaccggcacgcccatggtggaagcggggcg
gccggcgtcaaccacggcaacggcagcaacgccaccacctcttccaactcctgcactacc
tccactaacaacctcgcagcctcttcttcaacgacctctacggccacgcagaccggttac
cgtggcaacggcctctcaccatctcctagcaacagctatgacacctccccgcccccaatg
gtccccacacccatgccggtagtagcacctatggtccaaaacggacgggaaggcctcgcc
tctatgcccaacgggaagctctccccgccccgcttcgctgttagcaacgcctcctcgagg
gcctttgcgatcgagaaccccgatgaggaagtggacatcgatgacaaagttgaggagctc
atgagaatggacagtgctataattaaagaagagattaaagcattcttggggaatcggcga
atatcacaggcagtagttgcccaagttacaggtatcagtcagagccggatctctcattgg
ctgctccagcagggctcagacctcagtgagcagaagaaaagagccttctaccgctggtac
caactagagaaaactacacctggtgcaacactagcgatgcggcccaccccgatggccctg
gaggacattgtggagtggcgtcaaacaccccctcccattagcagcacccagggcagcttc
cgtctgcggcgtggaagccgcttcacctggaggaaagagtgtctggcggtgatggagagt
tatttcaatgacaaccagtaccccgatgaagccaaacgagaggaaattgccaacgcctgc
aatgcagttattcaaaaaccagggaagaagctttcagatcttgagagggtcacgtctctg
aaagtttacaactggtttgccaacagacggaaggaaattaagagaagagccaacatagaa
gcagcaatcctggagagtcatggaattgatgtccaaagcccgggaggtcattccaacagc
gatgagattgatggaaatgactacggtgagccagtagctgctgaccaagttttgggaatg
gatgacaacgccggcccaaacgaacaccaggaccccatagctttggcagtggagatggcc
gctgtcaatcacagcatcctggcactagcgaggcagggcggagccaccagtgacatcaag
acagaggtgctggatgacgagtga
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