Ctenopharyngodon idella (grass carp): 127498986
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Entry
127498986 CDS
T08802
Symbol
si:ch211-266g18.9
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 isoform X1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
127498986 (si:ch211-266g18.9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cide04131
]
127498986 (si:ch211-266g18.9)
Membrane trafficking [BR:
cide04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
127498986 (si:ch211-266g18.9)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_1
BsuBI_PstI_RE_N
Se_S_carrier
Motif
Other DBs
NCBI-GeneID:
127498986
NCBI-ProteinID:
XP_051724984
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Position
17:27703960..27714697
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AA seq
739 aa
AA seq
DB search
MFSLEPIPALKKIQNVSLFCVRESAAQTDSVELIAASTKRKIVSVYKVCVDRWECVRQVA
LPQEPVALAAHGTCLCVATCDRYFLHDYHSQTTLDLFPHNLAKQNIIANKYGKGEFILNG
PGSLGMFVMKNGTSQHPPVQWPDGVVDAAVHFPYVLVLQNQTVHIYSILDQQLKQTVPLQ
SAKSLISTEESVFVVADKEIHRLSPVPLEDQIQELVKRQRVDEALTLLDRVQDLLPMDSY
KDLHKNVICTSGMIKFYREAFVEAKELFIKGELDPREIISLYPAMPVVSEDFTPQTTAVS
NAKDLWMLSRDDWPTFQQYLSFLDDFLREVRPTGQGQMCPQDIDSTLFKLYLEQGEYGKL
DQLVSSQNNCNLQMCVPDLEQHKRFFTLGLLYESQGQHVKAIQTWVKIVEDESEDPSDIN
VFQHIVNTLSNLKHKPIVLKFVDWVLQREQEAGILIFTKMHASSHIIFAPEEVLTILTNY
SVATILYLEFLVNELHSKEEKHHTMLITSYIKWILQSIEGDCNETSREEMRHKLQKLLWQ
SSFYNADTIYDQITSSFLHVEKAILLGKSGKHKKALQVLVYEEKDQQAAESYCWRTSAGR
DRKFTQEMFLTLLQIYLESTHHVIAAVDLLNKNAASFDLVSVLRVLPGSWSMKLVLRFLS
ESLRGTVHDKRMRGLEMSLAKVETLRHKHAWVEATHEKIRVDRGCVCYSCQKRLTGPEFL
RRPTGELTHISCHGGENGQ
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgttctccctggaacctattcctgccctgaagaaaatccagaatgtgtcactcttctgt
gtccgtgagtcagcggctcagactgattccgtggagctcattgcagcttcgaccaagagg
aaaatagtgagcgtttataaggtgtgtgtggacagatgggagtgtgtaaggcaggtggct
ctgccgcaggagcctgtggctctggctgcgcatgggacatgtctgtgtgtggccacttgt
gacagatattttctccatgattatcatagccaaaccaccctagatcttttcccacataac
ctggcaaaacaaaatatcattgccaacaaatatggaaaaggagaattcattttaaatggg
cctggaagtttgggcatgtttgtgatgaagaatggtacttcccagcatcctcctgtacag
tggcctgatggagtggtggacgctgcagtgcatttcccatatgtgctagttctacagaat
cagactgttcatatctacagcattctggaccaacagctgaagcaaactgtacctttacaa
agtgccaaatctctcatctcaacagaagaaagtgttttcgttgttgctgacaaagagatt
catcggctgtcaccagttccgctggaggatcagattcaagagctggttaagagacagaga
gttgatgaagccctgacgctgctggacagggttcaagatctcttgccaatggattcctat
aaggatctacataaaaatgtcatctgcacatctggaatgataaagttctacagagaggct
tttgtggaagcaaaagagctttttattaaaggtgaactagacccaagggaaatcattagc
ctttatccagctatgcctgttgtgagtgaagactttacacctcagacaacagcagtcagc
aatgccaaggacctgtggatgttaagtcgagacgactggccgacatttcagcaatactta
agctttttggatgatttcttgagagaagtcaggccaacaggacagggccaaatgtgtccg
caggacattgactctacactttttaagctgtatttggaacaaggggaatatggaaaactg
gaccagcttgtgtcttcacagaataactgtaacctccaaatgtgtgtgcctgacttggag
cagcacaaaaggtttttcacacttggattgctctatgaaagccaaggccagcatgtcaaa
gcaattcagacctgggttaaaattgtggaggatgagagcgaagacccctcagacatcaat
gtattccagcatatagttaatactctctcaaatctgaaacacaaacccatcgtcttgaag
tttgtagattgggttcttcagagagagcaagaggctggaatactgatctttacaaagatg
catgcaagcagccacattatatttgcaccagaagaagtccttaccattctcaccaactac
tcagttgccacgattctttacttggaatttttagtcaatgaattacacagcaaggaggaa
aagcatcataccatgctcatcacatcatacatcaaatggatactgcagtcaatcgagggt
gactgtaatgaaacaagcagggaagagatgagacataaactacagaagttactctggcag
tcttctttctataatgctgatactatatatgaccaaataacatcctcgtttcttcatgtg
gagaaagcaattttgcttgggaaatctggtaaacacaaaaaggccctgcaggttttggtc
tatgaagaaaaagaccagcaggctgctgaaagctactgttggaggacctctgctggacga
gacaggaagttcacacaggaaatgttcctcaccctgcttcaaatctacctcgagtccact
catcatgtgatcgcagcagtggacctgctgaacaaaaatgcagcatcttttgatttagtc
agtgtgttgagggtgctgccgggctcctggtctatgaaactggtgttgcggttcctttct
gaatcactgagaggaacggtgcatgacaaaagaatgagaggtctggagatgagcctagcc
aaggtggaaactctaagacacaagcatgcctgggtggaagcaacgcatgaaaaaatccga
gttgacagaggatgtgtttgctattcctgccagaaacgtcttacagggcctgagttcctg
cgcaggccgactggagagctgacacacatatcctgtcatggtggtgaaaacggtcaatga
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