Ctenopharyngodon idella (grass carp): 127499470
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Entry
127499470 CDS
T08802
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03420
Nucleotide excision repair
cide04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127499470
09124 Replication and repair
03420 Nucleotide excision repair
127499470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cide04121
]
127499470
03400 DNA repair and recombination proteins [BR:
cide03400
]
127499470
Ubiquitin system [BR:
cide04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
127499470
DNA repair and recombination proteins [BR:
cide03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
127499470
TCR (transcription coupled repair) factors
Cul4-CSA complex
127499470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
127499470
NCBI-ProteinID:
XP_051725778
LinkDB
All DBs
Position
18:complement(98874..114440)
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AA seq
1108 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVQFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGAVVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSESGRD
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFFCGNVAHQQLIQITSVSVRLVT
QDSKALVSEWKEPQGRNISVASCNSTQVVLAVGRVLYYLQILTGELKQISSTEMEHEVAC
LDITPLGESAGESSICAVGLWTDISARLLKLPCFSPLHKEMLGGEIIPRSILMTTFEGSH
YLLCALGDGALFYFGLDIQTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PKRICYQEVSQCFGVLSSRVEMQDASGTTAAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLQNEYALSMVSCKLGRDPAVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGSFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFSHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSLYPLKQDLS
ERRAALSCVFLYMVYEYTNVYNDMGIPM
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaattacgtggtcacagcgcagaaacccacggcagtgaacgcctgtatcacg
ggtcacttcacatctgctgaggatctgaacctgctcatcgccaagaacacccgtctggag
atctatgtggtcaccgctgagggtctgcggccggtcaaagaagtcggcatgtacggcaag
atcgcagtcatggagctcttcagacccaagggtgagagcaaagatcttctgttcattttg
actgccaaatacaacgcctgtatcctggagtacaagcagaacggagacagcattgacatc
atcacccgtgctcacggcaacgtccaggatcgcattggccgtccgtcggaaaccgggatc
atcgggatcgtggatccggagtgccgtatgattggcttgcggctgtacgacgggctgttt
aaggtcatcccactggaccgcgacaaccgtgagctcaaagccttcaacattcgtctggag
gagctgcaggtcatagacgtccagttcctgtacggctgccaggcgccgaccgtctgcttc
atatatcaggaccctcagggtcgacacgtcaagacatacgaggtgtctctgagggagaag
gagttcaacaaaggtccctggaagcaggaaaatgtggaagctgaagcatcaatggtcatt
ccagtcccagagccgtttggaggtgctataatcattggacaggagtccatcacgtatcac
aacggagacaaatacttggcgatcgcacctccgaccatcaagcaaagcaccattgtgtgc
cataatcgcgtggacccgaacggctcgcggtacctgctgggagacatggagggccggctg
ttcatgctgctgctggagaaagaggagctgatggacggcgcggtggtgctcaaagacctg
cgcgtggagctgctgggagagacctccatcgcagagtgtctgacgtatctggataacggt
gtggtgttcgtgggatccagactgggagattctcagctagtgaagttgaatgtggacagt
aatgaccagggctcatatgtggctgtaatggagaccttcactaacctggggccaatagtg
gacatgtgtgtggtggacctggagagacaaggacagggccagttggtgacatgctccggg
gcgtttaaggaaggctctctgaggatcatccgcaatggcataggaatccatgaacatgcc
agcatcgacctgcccggaattaaaggtctgtggccacttcgctccgagtcaggcagagac
actgatgacatgctggttctgtcttttgtcggtcaaaccagagtgctgatgctgagcgga
gaggaggtggaggagacagagttgccgggatttgtggataatcagcagacgttcttctgt
gggaatgtagcgcatcagcagctcatacagatcacgtcggtgtctgtgcggctggtcact
caggacagcaaggctctggtgagcgagtggaaggagccgcagggcaggaacatcagtgtg
gcgtcctgtaacagcacacaggtggtgctggctgtgggacgagtcctctattaccttcag
atactcaccggagaactcaaacagatcagctctacagagatggagcatgaggtggcgtgt
ctggacatcactcctctgggcgagagcgcaggagaatccagcatctgcgctgtgggactc
tggaccgacatctcggctcgcctgctgaagttgccctgcttcagcccgctgcacaaagag
atgctgggcggagagatcattcctcgatccatcctcatgactacgtttgagggcagtcac
tacctgctgtgcgcgctgggagacggggcgctcttctacttcggactggacattcagaca
ggtgttttaagtgaacgtaagaaggtcactctcggcactcagccgacggttctgcgcacc
ttccgctcgctctccacatccaatgtgttcgcctgctctgacagaccgaccgtcatctac
tccagcaaccacaaactggtcttctctaacgtcaacctcaaggaggtgaactacatgtgc
ccactcaactccgagggctaccctgacagtttggctctggccaataacagtactctgacc
atcggcacgattgacgagatccagaagctgcacatccgaaccgtgccgctctacgagtcg
cccaagcggatctgttatcaggaggtgtctcagtgcttcggagttctgtccagtagagta
gaaatgcaggatgctagtggaacgacagcagccgtgcggcccagtgccagcacacaggcg
ttgtccagcagcgtgagctccagtaagttgtttcccagcagcacgtcacctcatgagacg
tcgttcggagaggaggtggaggtgcacagtttactggtggtggatcagcacacgttcgag
gtgctgcacgcgcatcagttcctgcagaacgagtacgccctcagcatggtctcctgtaag
ctgggcagagatccggccgtctacttcatcgtcggcacagcaatggtgtatccggaagag
gcggagcctaagcagggccgcatcatcgtctttcactatacagacggtaaactgcagacg
gtggcagagaaggaggttaaaggtgccgtttactctatggtggagtttaacggtaaactg
ttggccagcatcaacagcaccgtgcgtttgtacgagtggacggcagagaaggagctgcgg
accgagtgcaatcactataataacatcatggccctgtatctgaaaactaaaggcgacttt
atcctggtgggcgacctgatgcgctcagtgctgctgctggcctacaaacccatggagggc
agctttgaggagattgcccgtgatttcaatccaaactggatgagtgctgtcgaaatcctg
gacgatgacaacttccttggagcggagaacgctttcaacctgtttgtctgccagaaggac
agtgcggccactacagacgaggagcggcagcacctacaggaagtgggtctgttccacctg
ggcgaatttgtcaatgtgttttcacacggttctctggtgctgcagaacctgggcgagagc
tccactccaacccaagggtctgtgctgttcggcacagtcaacggcatgatcggtttggtg
acgtcactgtcagagggctggtacagtttactgctggatctacagaaccgactgaacaaa
gtcatcaagagcgtcggcaagatagagcacagcttatatcctttaaaacaggatctgtca
gagagacgtgctgcgttatcgtgtgtgttcttgtatatggtttatgagtacacaaatgtg
tataatgacatgggtattccaatgtaa
DBGET
integrated database retrieval system
