Ctenopharyngodon idella (grass carp): 127499822
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Entry
127499822 CDS
T08802
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127499822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127499822
03036 Chromosome and associated proteins [BR:
cide03036
]
127499822
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127499822
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127499822
mRNA degradation factors
5'-3' decay
Decapping complex
127499822
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127499822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
127499822
NCBI-ProteinID:
XP_051726391
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All DBs
Position
18:5302818..5318085
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AA seq
484 aa
AA seq
DB search
MSTARMENPVILGLSNQNGQMRGSVKPAGGPGGGGGGSQTMQPAQVKASSTVNNGNSQPA
PTANTIIKPGDDWKKNLKLPPKDLRMRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKP
SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQALVIVPTRELALQ
VSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVNQ
VQMVVLDEADKLLSQDFVQMMEEMLSSLPKQRQILLYSATFPLSVQKFMNTHLQKPYEIN
LMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGY
SCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYL
HRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPSSIDKSLYVAEYHSESGE
EVKL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagccagaatggagaatccagtgattctgggactatcgaatcagaatggccaa
atgcgaggctctgtaaagccagcagggggtcctggaggaggtggaggggggtcccaaaca
atgcagcctgcccaggtcaaagcctccagcacagttaacaatggcaactcccagcctgca
cccacagccaacactatcatcaagcctggggatgactggaagaagaatctaaagcttcct
ccgaaggatttgcgcatgagaacttcagatgtgacggcgaccaagggaaatgagtttgag
gattactgcttgaaacgggagctgcttatgggcatctttgaaatgggctgggagaaaccg
tcacctatacaggaggagagcattcccattgcgttgtctgggagggacattctagccaga
gccaagaacggcacaggaaaaagtggcgcctacctcattcccttacttgaacgcattgac
ctgaagaaagacagcatacaagcgttggtcattgtgcccactagagaactggctctacaa
gtcagccagatctgtatccaggtcagcaaacacatgggcggggtcaaggttatggcaact
acaggtggaaccaaccttcgtgatgacatcatgagacttgacgaaacagtgcatgttgtc
attgccactccaggaagaattttagacctcatcaaaaagggagtggccaaagtcaatcaa
gtacagatggtcgtattggatgaggcagataagctcctgtcgcaggactttgtacagatg
atggaggagatgctgagctctttgcctaaacaaaggcaaattttgctgtactctgccacc
ttcccactaagtgtgcaaaagttcatgaacacccatctgcagaagccctatgagataaac
ctgatggaggagctgaccctgaagggggttactcagtattacgcctatgtgactgaaagg
cagaaagtccattgccttaatactctgttctccaggctccagatcaatcagtctataatc
ttctgcaattcatcccagcgagtggagctcctggccaagaagatttcgcagcttggatac
tcctgtttctacattcacgccaagatgagacaggaacacagaaaccgtgtgttccatgat
ttcagaaatggcttatgtcgaaatctcgtctgcactgatctcttcacaagaggaattgat
atacaagctgtgaatgtggtgatcaacttcgatttccccaaacttggggagacgtacctc
catcgcattggcagatcaggccgatttggacacttgggtctcgccattaacttgatcact
tatgatgaccgctttaacctgaaaggtattgaagaacagctgggtactgaaatcaagccc
attcccagcagtattgacaagagtctatatgtggccgagtaccatagtgagagtggggag
gaggttaaactgtga
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