Ctenopharyngodon idella (grass carp): 127500290
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Entry
127500290 CDS
T08802
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127500290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127500290
03012 Translation factors [BR:
cide03012
]
127500290
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127500290
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127500290
Translation factors [BR:
cide03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127500290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
AAA_14
NB-ARC
NPHP3_N
TsaE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
127500290
NCBI-ProteinID:
XP_051727334
LinkDB
All DBs
Position
18:34963929..35009068
Genome browser
AA seq
1026 aa
AA seq
DB search
MSHGYGNRRGRRGGGRRFGDGGSRWDGGAGSSGGAGYPRSSDWDSREEQGHGRGRKGGGG
GGGGGGGRGKHPPHLKGREIGLWYAKWGGIKRSEAERKSRAVVQMDESREQHITQLLNSV
QRDPGRASHPSTSQSWRVKEEPSGHSYFDGDEPPEPQNIVKVPKIEPKEEKQEDELGANV
KEDLNDTDLEYLFQDVVRTPSLDEELKKDQEKKKDNARYIDMLKFRQKLPSYGMREELVK
LISANQVLVISGETGCGKTTQVTQFILDDFIQRGMGSLCRVVCTQPRRISAISVAERVAA
ERAEPVGEGKSCGYQIRLQSRLPRKQGSVLYCTTGIILQWLRSDPYLSSVSHLILDEIHE
RSLQSDVLLTIVKDLLIAREDLKVVLMSATLNAEKFSKYFNNCPMIHIPGYTYPVKEFLL
EDVVELLRFQPQQQDRRPRYRRGFMHGQNTRPEKEQKEAEYHESWPCYTRTLRDRYSDST
IDTLKMMDDDEKINLELIVGLIRHIVMKEDDGAILVFLPGWDNISTLNDLLVADQMFKSE
RFIIIPLHSLMPTVSQTQVFKKPPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHF
DTQNNIRTMTAEWVSLANAKQRKGRAGRVSPGKCYHLYNGLRASLLDNYQLPEIQRTPLE
ELCLQIKILKLGPIACFLRKTMDPPSDKAIELAITHLVDLNALDRNEELTPLGFHLARMP
VEPHIGKMILFGALLGCLDPVLTIAASLSFKDPFFIPLGKEKIADHRRKILSQNSRSDHL
TIVNAFWGWEDAKRQGGRFEREYCWENFLSANTLQMLQNMKGQFAEHLLAAGFVNSKDPK
DPSSNINSENEKLIKAVIVAGLYPKVAKIRPSHSKKRPMPVKVYTKADGKVCIHPKSVNA
EETQFHYTWLIYHLKMKTTSIFLYDCTEVSPFSLLFFGGDISIQRDQDQETIAVDEWIVF
QSPARIAHLVKELRKELDVLLEEKIKSPRPVDWNDRQSKDCAVISAIIDLITTQETPAQD
HRRGSQ
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatggatatggtaatagacgcggtcggagaggagggggtcggcggttcggagat
ggagggtccaggtgggatggaggagctggatccagtgggggtgcaggatacccgaggagc
tctgactgggactcaagggaagagcaaggacatggaaggggacgaaaaggaggaggagga
ggaggaggaggaggaggaggaagaggcaaacatccaccccatttgaagggtcgagaaata
ggactgtggtatgccaaatggggcggcattaaaagatctgaggcagagaggaaatctagg
gctgttgttcagatggatgagtctcgagagcagcacattactcagttgctgaattcagtc
cagagagatccgggcagagcctcgcatccctccacgtctcagagctggagggtgaaggag
gagcccagcggccacagttactttgacggagatgaacctccagaacctcagaacattgtg
aaagtgccaaaaattgagcctaaagaggagaaacaggaagatgagctgggagcaaatgtg
aaagaggaccttaatgatactgacctggaatacttattccaggatgttgtgcggacaccc
tccctggatgaggagctcaagaaagatcaggagaagaaaaaagataacgctagatacatt
gatatgctgaaattcagacagaagctcccttcctatgggatgagagaggagctggttaaa
ctgatcagtgctaaccaggtactggtaatcagtggagagacaggctgtggtaagaccacc
caggtcactcaattcatccttgatgacttcatccagaggggcatgggctctctctgcagg
gtggtttgcacgcagccacggcgtatcagtgccatatctgttgcagagagagtggctgca
gaaagggcagagccggtgggagaagggaagtcctgtgggtatcagatccgtctgcagagt
cggttaccacggaaacaaggctcggtgttgtattgtaccacgggcattattcttcagtgg
ctccgctcagatccatatctctctagtgtaagtcatctgatcctggatgaaattcatgag
aggagtcttcagtctgatgttcttctcaccatcgtgaaggacctgttaattgctcgagag
gacctaaaagtagtcctcatgagtgcaacacttaacgctgaaaaattcagcaagtatttc
aataattgtcccatgatccatattcctggatacacatacccagtaaaagagtttttacta
gaggatgtggtggaattgcttagattccagccacagcaacaggaccgaagacctcgctat
agaagagggtttatgcacggccagaacacacggccagagaaagaacagaaagaggccgaa
taccatgagagctggccctgttacacccgtacgctcagagatcggtactcggacagcacc
attgacacgctgaagatgatggatgatgatgagaagatcaatctggagcttatcgtagga
ttgatccgacacattgtgatgaaagaggatgatggagcaattctagtgtttctgcctgga
tgggacaacatcagcaccctaaatgatttgctcgtggctgaccagatgtttaagtcagaa
cggtttatcatcatccccctccactctttgatgcccacggtctctcagactcaggtgttc
aaaaagccgcccccgggagtgcgcaagattgtgatcgcaaccaacatcgcagaaaccagt
attacgatagatgatgttgtgtatgtgatcgatggagggaagattaaagaaactcatttt
gacacccagaacaatatcaggaccatgacagcagagtgggtgagcttagccaacgccaaa
cagaggaagggccgtgctggcagagtgtctccagggaaatgttatcacctgtataatgga
ctgagggccagcctcctggataactaccagttacctgagatccaacgcactccactggaa
gagctttgtttgcaaataaagatactgaagttgggccccattgcatgtttcctgaggaaa
actatggaccccccatcagacaaagcgatagagctggccatcacacacctggtggatctg
aatgccctggaccggaatgaagagctgactccgttaggatttcatctagcccgtatgcct
gtagagcctcacataggaaaaatgattctgtttggggctcttctgggctgtttggaccct
gtgcttaccattgcggccagccttagctttaaagatcctttcttcataccactgggaaag
gagaagatcgcagaccacaggagaaaaatactttcccaaaactctagaagtgatcatctc
actattgtcaatgcattttggggctgggaagatgctaagagacagggcggcagatttgag
agggaatactgctgggaaaacttcctgtctgccaacacactgcagatgcttcagaatatg
aagggtcagtttgcagagcatcttttggcagctggctttgtgaatagtaaggaccctaaa
gatcccagctctaacatcaactcagagaatgagaagctgattaaggcagtgatagtagcg
ggactgtacccaaaagtggccaagattcgccccagccatagtaagaagagaccaatgcca
gtgaaggtgtacactaaggctgatgggaaagtttgtatccatcctaaatctgtcaatgca
gaggaaactcagttccactacacatggctcatctatcacctgaagatgaagaccaccagt
atcttcctctacgactgtaccgaggtgtctccattttcattgctgttcttcggaggggac
atttccatccagagggaccaggaccaagagaccatcgctgtggatgagtggattgtattt
cagtccccggcacgcattgctcaccttgtcaaagagctgaggaaggagctggatgtgcta
ctagaggagaagataaaaagtccacgccctgtggactggaatgaccggcagtctaaagat
tgtgctgtcatctctgccataattgacctcatcaccacacaggaaacccctgctcaagac
cacaggagaggcagccagtga
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