Ctenopharyngodon idella (grass carp): 127500445
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Entry
127500445 CDS
T08802
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127500445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127500445
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127500445
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127500445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
FlgM
Motif
Other DBs
NCBI-GeneID:
127500445
NCBI-ProteinID:
XP_051727453
LinkDB
All DBs
Position
19:11252227..11275287
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AA seq
875 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYESDLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRMIERHRYHI
RMLETILRMLDNDSIQVDSIRKIKDDVEYYLDSSQDPDFEENEFIYDDLDLEEIPQPLGT
TSPQGHTEDEIFQHSSSTPTSTTSSSPIPPSPATCTTNSEDDKKRGRSTDSEISQSPIKN
GNPSSSLSSSSSLSSSSSSSGASSNSLISMATVASSGSSALGGSSLLGNMGGPLQNSGSY
SSATQQQTQQSQQQQHQPKNAVSSHSGTNSASSNNSILLPTSSSTSPPNTSTLCPLTPSS
PSQPSLGTSLSSSLGLGKGTSVTSTTNQMPGLVLSGMPASLNSMTGFLSGSTPAPYAQAA
ASGCIGSGLSASIGTNISSTNSSGVITSVGTNGSLGSTSLLSSGPGVLGLGSTQSAVEPL
PLVAPSPVGGTLTSGSNVGVIGSNGGSGNAVGSAALPRPPSGPKQNGGTSYSAVVADSTS
DSALNSASQSQNSQSSSLNSSTNQPKDSGSSLLVSMTLPPSSPSPSYSENKPCGGSLLNG
PHSYTQAADTIKPQEPLSSQKSIVERVAQSSGLEGELSALHISSASQSALSEVSIPPSLG
VCPLGPVPLSKEQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSD
TVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDE
FEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaagaaaacttcaaggcgaaatagacagatgtttgaaaaaagttgcagaa
ggggtagagcagtttgaggacatttggaaaaagcttcacaatgcagccaatgccaaccaa
aaagaaaaatatgagtctgacctcaaaaaagagattaaaaaattacagcgccttcgtgac
cagattaagacatgggtcgcctccaatgagatcaaagacaaaagacagctagtagagaat
cgcaaactcattgagacacaaatggagcggtttaagattgtggaacgggaaaccaaaaca
aaagcatactctaaagagggactcggtcttgctcagaaagtcgatcctgcacagaaagag
aaagaagaggtcgggcagtggctaacgaacacgatagacacgttgaacatgcaagtggat
cagttcgagagcgaggttgaatcgctttctgtccagaccaggaaaaagaaaggagacaaa
gagaagcaggatcggatcgaggaactgaaacgaatgatcgagaggcaccggtatcacatc
cgcatgctggaaaccatccttcgaatgctggacaatgactcaatacaggtggattccatc
cgcaagattaaagatgacgtcgagtactaccttgattcctctcaggatcctgactttgag
gagaatgagttcatctatgatgaccttgatttagaggaaattccccagccactaggtacc
acatctccacaaggtcacacagaggacgagatcttccagcactccagttccacaccaacc
tccacaacgtcatcatctcccatacctccctctccggctacttgcactacgaattcggaa
gatgataagaaaagaggtcgctcgacagacagtgaaatcagtcagtctcctatcaagaat
ggaaatccatcttcatctctatcctcctcttcctcactctcatcctcatcctcatcctcg
ggagcctcttcaaactctttaatctccatggctactgtcgccagcagtggaagctcggca
ttagggggcagcagcctcttaggcaacatgggcggccccctccagaactctggcagctat
agttcagcaacacagcaacaaacacaacaatcccaacaacagcagcaccagcccaaaaac
gcagtctcctcccactccggcaccaactctgcctcctccaacaacagtatcttactccca
acatccagctccacatcgccacccaacaccagcacattgtgccccctgacacccagctca
ccgagccagccttcattgggaacgagtctttcctccagtctgggcctcgggaaaggtacg
tcggtgacgagtaccacaaaccagatgcccggtctggtcctttcagggatgccggcatcc
ttgaacagcatgactgggtttttgagcggatccaccccagcgccttacgcgcaagcggcg
gcttcaggttgcataggcagcggactgtcagcatcgattggaacgaatattagcagtaca
aactccagtggagtcataacctcagtggggactaacggaagtctaggctccacaagcctc
ttgagctcagggcctggtgttttgggtcttgggtccacacagtctgctgtggagccttta
cctctggtggctcccagccctgtgggaggcacactgacctcagggagcaatgtgggagtt
atcggaagcaatggagggtcaggaaatgcagtgggaagtgctgcgctaccacggccacct
agtgggccgaaacaaaacggtggtacaagttatagtgctgtggtagcagacagcacgtca
gactctgccctcaacagtgccagccaatcacagaacagccaatcctcatccttaaattcc
tcaacaaatcagcctaaggacagtgggtccagccttctggtgtcgatgacactgccgccc
agctcgccctcaccatcgtacagtgagaataaaccatgcggtggcagcctgctgaacggc
ccccactcatacacacaggctgccgacaccatcaagcctcaggagcctctgagttctcaa
aagtcgatagtagagagggtcgcccagagctcagggttagaaggagagctgtctgcacta
catatttctagtgcttctcaatctgctctgtcagaggtaagcatccccccttcgttgggc
gtgtgtccactgggccccgtccccctctccaaagagcaactctaccagcaagccatgcag
gagtctgcctggacgcacatgcctcacccgtccgactctgagaggatcaggcagtacctg
atgaggaacccctgcccaacactgccttttcaccaccaggtgccacctcctcactctgac
actgtggagttctaccagagactgtctacagagaccctcttcttcatcttttactactta
gagggtacaaaagcgcagtatctagcagccaaggccttgaaaaaacagtcatggaggttc
cacacaaagtacatgatgtggttccagaggcatgaggagcccaagaccatcactgatgag
tttgagcaaggaacatatatttactttgactatgagaaatggggccagaggaaaaaggaa
ggatttacatttgagtacaggtacctcgaggaccgggaccttcagtga
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