Ctenopharyngodon idella (grass carp): 127500515
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Entry
127500515 CDS
T08802
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03013
Nucleocytoplasmic transport
cide03015
mRNA surveillance pathway
cide03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127500515
09122 Translation
03013 Nucleocytoplasmic transport
127500515
03015 mRNA surveillance pathway
127500515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127500515
03041 Spliceosome [BR:
cide03041
]
127500515
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127500515
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127500515
Spliceosome [BR:
cide03041
]
Complex C
Other components
EJC/TREX
127500515
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127500515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
127500515
NCBI-ProteinID:
XP_051727657
LinkDB
All DBs
Position
19:21326426..21337046
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AA seq
470 aa
AA seq
DB search
MLGPSSKHSIRRMLMTSQTYPAGVVKSNGFIQHFEMTENDVENELLDYEEDEVDGGVAGD
TGLGHNDGVISIRKEGVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ
AILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSK
YMPSVKVAVFFGGLSIKKDEEVLKRESPHVVVGTPGRILALSRNKSLNLRHIKHFILDEC
DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLT
LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIH
RAMPQDERLARYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARA
GRFGTKGLAITFVSDETDARTLNDVQDRFEVNISELPEEIDISSYIEQTR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgttgggtccttcatcaaaacactcgattcgtcgcatgttgatgacgtcgcaaacatat
ccagcaggtgtagtgaaatccaacggcttcatacagcatttcgagatgacagagaacgac
gttgagaatgagctgttagactatgaggaggatgaggttgatggaggtgttgctggggat
acagggcttggacacaacgatggtgtcatatccatcagaaaagaaggggtcaaagggtca
tatgtgtccatccactcctcaggattcagggatttccttctcaaaccagaactcctgaga
gctatagtggactgtggctttgagcatccatctgaggttcagcatgaatgcattcctcag
gcgatcttggggatggatgtattatgtcaggccaagtctggaatggggaagacggctgtc
tttgtgttggccacccttcagcagctggagccagtgaccggtcaggtatcggtgttggtg
atgtgtcatacccgagagctggcgttccagatcagcaaagagtatgagcgcttctccaaa
tacatgcctagtgtcaaggtggcggtgttctttggggggttatctataaagaaggatgag
gaggtgctgaaaagagagagccctcatgtggtggtgggaactcctggacgtattctagct
ctgtctcgcaacaagagtctcaacctgcgacacatcaagcacttcatcctggatgaatgc
gacaagatgctggagcaacttgacatgcggcgtgatgtccaggaaatctttcgtatgacc
cctcatgagaagcaggtcatgatgttcagtgcgaccctgagcaaagagatccgtcccgtc
tgcagaaagttcatgcaagatccgatggaaatttttgtggacgatgagaccaagctgacg
cttcatggcctccagcagtactacgtcaagctgaaggacaacgagaagaataggaagctc
tttgacctcttggatgtgttggagttcaaccaggtggtgatcttcgttaagtcggtgcag
cgttgcatcgctcttgctcagttgctggtggagcaaaatttccctgctattgccattcac
agagcaatgcctcaagatgaaagactagctcgatatcagcaatttaaggatttccagaga
cggatcctggtagccacaaacctgtttggccgaggtatggacatcgaaagagtcaacatt
gccttcaactacgacatgcctgaagattcggacacatacctgcacagggttgcgagggcc
ggcaggtttggaacgaaaggtctggccatcacctttgtgtcagatgagactgacgcccgc
actttgaatgatgttcaggacaggtttgaggtgaacatcagcgaacttccagaggagatt
gacatctcgtcgtacattgaacaaacacgataa
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