KEGG   Ctenopharyngodon idella (grass carp): 127500597
Entry
127500597         CDS       T08802                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
cide  Ctenopharyngodon idella (grass carp)
Pathway
cide03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cide00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127500597
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cide03041]
    127500597
Spliceosome [BR:cide03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    127500597
 Complex C
   U5 SnRNP specific factors
    127500597
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_IFT122_1st WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N eIF2A Cytochrom_D1 Beta-prop_Nup120_160 WD40_like
Other DBs
NCBI-GeneID: 127500597
NCBI-ProteinID: XP_051727811
LinkDB
Position
19:29952287..29959622
AA seq 347 aa
MIEPKKRVAEMAVVPAGVKRPRTELVAAAQSQQLSAMGPPRSSSLQAPIMLLSGHEGEVY
CCKFHPNGATLASSGYDRLILMWNVYGDCENYATLKGHSGAVMELHYNTDGSLLFSASTD
KTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASVHTF
QNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSADGSYL
LSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCCWSPDGGKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGSSDKRLYIGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgatcgaaccgaagaagcgtgttgcagagatggcagtcgttcccgccggtgtgaagagg
ccccggacagagctggtggctgcagcgcagtcccaacaactctctgctatgggcccccca
cgcagctccagtctgcaggctcccataatgctgctctccggtcatgaaggtgaagtttac
tgctgcaagtttcaccccaatggagctacactagcctcttctggatatgaccgcctcatc
ttgatgtggaatgtctacggagactgtgagaattatgccacgcttaaaggccacagtgga
gctgtgatggagcttcattataatacggacggcagtctgctgttctcagccagtacagac
aagaccgtatgcgtgtgggacagtgagacaggggagcgtgtgaagcgtctgaaaggtcac
acgtcctttgtgaactcatgttttccggcgcggcgtggcccacagctggcctgcacgggc
agtgatgatggaactgtaaagctgtgggacatcaggaagaaggcctctgttcacacgttc
cagaacacgtatcaggttcttagtgtgacattcaatgacaccagtgaccagatcatctca
ggaggcatcgacaacgacataaaggtgtgggacctcagacaaaacaaactgatttacagt
atgcagggtcatggagactctgtgaccggtctgagtctcagcgcagacggatcctacctg
ctgtctaactccatggataacagcgtgcgtgtctgggatatccgtccatttgcaccaaag
gagaggtgtgtgaagatctttcagggaaatgtccataactttgagaagaatcttctcaga
tgctgttggtctcctgatgggggtaagattgctgccggttctgctgacaggtttgtgtat
atttgggacacaacgtcccgtaggatcctttataagctgcctggtcatgctgggtctgtc
aatgaggtggctttccatcctgaagaacccattgttctctctggatccagtgataagcgc
ctctacatcggagagattcaataa

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