Ctenopharyngodon idella (grass carp): 127500731
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Entry
127500731 CDS
T08802
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127500731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127500731
03036 Chromosome and associated proteins [BR:
cide03036
]
127500731
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127500731
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127500731
mRNA degradation factors
5'-3' decay
Decapping complex
127500731
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127500731
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
127500731
NCBI-ProteinID:
XP_051728108
LinkDB
All DBs
Position
19
Genome browser
AA seq
497 aa
AA seq
DB search
MATRMENAGPAVMGLNTHNRQFIGQPKAPSQLGPQTAITQPGKEPMGSQKPAGAFQEASG
PGIRFGDDWKRSLQLPDKDNRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQ
EESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDMKKDYIQAIVMVPTRELALQVSQI
SIQISKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGIAKVDKVQMM
VMDEADKLLSRDFVVLIEDIIGFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEE
LTLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFY
IHAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPRNAETYLHRIG
RSGRFGHLGLAINLITAEDRFNLKTVEDQLMTDIKPIPGSIDKSLYVAEFHSVDPDCEVE
AEAEAEAFQPAGGSDAP
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaggatggagaatgctggcccagctgtcatggggttgaacacacacaacagg
cagtttataggacagcctaaagccccatctcaattaggaccccaaactgcaattactcag
cctggaaaggagcccatggggtcccagaaacctgccggtgcatttcaggaagcttcagga
cctggcatcaggtttggtgatgactggaaaagaagcctacagcttcccgataaggacaat
agagtcaaaacttctgatgttactgcaaccaaaggaaatgagtttgaggactactgctta
aagagagagctcctgatgggcatttttgagatgggctgggaaaagccctcccccattcag
gaggagagtattcctattgccctctctggacgcgatatactggctcgtgccaaaaacggg
acaggaaagagtggtgcatacctgatccccctgctagagagaattgacatgaaaaaggat
tatatccaggccatcgtgatggttcccactcgtgaactagctctgcaggtcagccagatc
agtattcagatcagcaagcacctgggcggtgtcaaagtcatggcaaccacaggggggacc
aaccttcgagatgatatcatgcgcctggatgagacggttcatgttgtaatagcaactcct
ggcagaattttggacttgataaaaaagggcatagccaaagtggataaagttcaaatgatg
gttatggatgaggctgataagctgctctctcgggactttgtggttcttattgaggacatc
attggtttccttgcgaagaacagacagatactgctctattcggccacgttccccatcagt
gtacagaagttcatggcaaagcacctgcagaagccctatgagattaatctgatggaggaa
ctgaccctaaagggcattacccagtactatgcttacgtcacagaaagacagaaagtccac
tgcctcaacacactgttctccaggttgcagatcaatcagtccatcatcttttgtaactct
actcagcgagtggagcttttggccaagaagatcacacagctgggctactcctgcttctac
attcatgcaaagatgatgcaggaatacagaaaccgtgtttttcacgacttcagaaatgga
ctctgcaggaaccttgtttgcacagatttattcactagagggattgacatccaggcagta
aatgtggtcatcaactttgacttccccagaaatgccgaaacatatctgcatcgcatagga
cgctcaggaaggtttggacatctgggtttggcaatcaatctcattactgctgaggatcgt
tttaacctgaagaccgttgaggaccagctgatgacggacataaagcccattcctggcagc
atcgataagagcctgtatgtggcagagtttcactctgtggatcctgactgtgaggtggaa
gcagaggcagaagctgaggcgtttcaacctgccggagggtctgatgccccttag
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