KEGG   Ctenopharyngodon idella (grass carp): 127500811
Entry
127500811         CDS       T08802                                 
Name
(RefSeq) histone deacetylase 1 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
cide  Ctenopharyngodon idella (grass carp)
Pathway
cide03082  ATP-dependent chromatin remodeling
cide03083  Polycomb repressive complex
cide04110  Cell cycle
cide04330  Notch signaling pathway
cide04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:cide00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    127500811
   03083 Polycomb repressive complex
    127500811
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    127500811
   04350 TGF-beta signaling pathway
    127500811
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    127500811
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cide03036]
    127500811
Enzymes [BR:cide01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     127500811
Chromosome and associated proteins [BR:cide03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     127500811
   HDAC complexes
    Sin3A-HDAC complex
     127500811
    BRAF-HDAC complex
     127500811
    REST complex
     127500811
    SHIP complex
     127500811
    MiDAC complex
     127500811
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     127500811
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    127500811
  Chromatin remodeling factors
   NuRD complex
    127500811
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 127500811
NCBI-ProteinID: XP_051728299
LinkDB
Position
19:22539036..22546304
AA seq 484 aa
MALSSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
NAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEDDPDKRISIRAHDKRIACDEEF
SDSEDEGQGGRRNAANYKKPKRVKTEEEKDGEEKKGEPTDVKEEEKASEEKMDTKGPKEE
LKTV
NT seq 1455 nt   +upstreamnt  +downstreamnt
atggcgctgagttctcaaggaacaaagaagaaagtttgctattattatgacggagatgtt
gggaattactactatggccagggtcatccgatgaaaccccacagaatccggatgacccac
aacctcctgctcaactatgggctgtataggaaaatggaaatttatcggcctcataaggcc
aatgctgaagaaatgaccaagtaccacagtgacgactacatcaagttccttcgttccatc
cgcccagacaacatgtctgagtacagcaagcagatgcagagatttaacgtaggggaggat
tgtcctgtctttgacggcttatttgagttctgtcagctctcaacaggtggatctgttgct
ggggctgtgaaactcaacaaacagcagacagacattgccattaactgggcaggaggcctt
catcatgccaagaaatctgaggcatctggattctgctacgtcaacgacatcgtactggcc
attctggaactgctcaaataccatcaaagagtgctttacattgacattgacattcatcac
ggtgatggagttgaggaagccttctacacaactgaccgtgtcatgactgtgtccttccac
aaatatggagagtatttccctggtaccggagacctcagagatattggcgcagggaaggga
aaatactacgctgtaaattacccactcagggatggtatcgatgatgaatcctacgaagcc
atattcaaacctatcatggccaaagtgatggagatgtaccagcccagtgctgtggtgctc
cagtgcggcgctgactctctgtctggagatagattgggctgctttaacctcaccatcaaa
ggtcatgctaagtgtgtggagtacatgaagagcttcaacctgcccctgctcatgctggga
ggtggaggctacaccatcaggaacgtggcccgctgctggacctatgagacggctgtcgcg
ctggacagcactattcccaatgagctcccgtataatgactactttgagtattttggacct
gatttcaagctccacatcagcccctccaacatgaccaatcagaatacaaatgactacctg
gaaaagatcaaacagcggttgtttgagaatctgcggatgttgcctcatgccccaggggtt
cagatgcaggcgatcccagaggatgctgttcaggaagacagtggagatgaggaggacgac
cctgacaaacgcatctccatccgtgcccatgacaagcggatagcctgcgatgaggagttc
tcagattctgaggacgaaggacagggtggccggagaaatgcagccaattacaagaagcct
aaacgagtgaagactgaagaagagaaggatggagaagagaagaaaggtgagccaacagat
gttaaagaagaagagaaagcttcagaagaaaaaatggacacaaaggggccaaaagaagaa
ttaaaaacagtctga

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