Ctenopharyngodon idella (grass carp): 127501146
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Entry
127501146 CDS
T08802
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127501146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127501146
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
127501146
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
127501146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
127501146
NCBI-ProteinID:
XP_051728914
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All DBs
Position
19:16788578..16793056
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AA seq
291 aa
AA seq
DB search
MAAVQVSEAEKVYLMHGVRDDLRLDGRGCEDYRHMEIETDVVSNTDGSAKISLGHTDVLV
GVKAEIGKPKPTVPDEGYLEFFVDCSANATPEFEGRGGEELGVELSNILYKVFNNRHSVD
LRSLCICPGENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPKVHISEDEEGGKEI
ELSDDPYDCMRLDVENVPCIVTLCKIGHRHVVDATLQEKACSVASLLISVTHKGMVTCVR
KMGRGSLDPESIFEMTEAGKRVGKTLHAPLMELLQKEESLGKKRQKVGFLG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagttcaagtgagcgaagccgagaaggtttatcttatgcatggagttcgagat
gacctgagattggacggacgaggatgtgaagactacagacacatggagatcgagacggat
gtggtgtcaaacactgatggatctgctaaaatcagtcttggtcacacagatgttctcgta
ggagtaaaggcagagattggtaaacccaaacccacagtaccagatgaaggttatctggag
ttctttgtggactgctcagcgaacgccactccggagtttgaggggcgtggaggggaggag
ctgggggtggagctcagtaacatactctataaagtgttcaacaacaggcacagcgtggac
ctgcgttccctctgcatctgcccgggagagaactgctgggtgctgtacgtggacgtgctg
ctgctgcagtgtgacggaaacctgtttgacgccatttccatcgcaatcaaagctgctctg
tttaatacacgaattcccaaagtgcacatatctgaggatgaagagggtgggaaagagatt
gagctgtcagacgacccgtacgattgcatgcggctcgatgtggagaatgtgccgtgtatc
gtaaccctgtgcaagattggtcacagacacgtggtggacgccacgctacaggaaaaggcc
tgttctgtggccagtctcctgatttcagtcacacacaaaggaatggtcacatgcgtcagg
aagatgggaaggggaagtctggacccagagagcatctttgagatgacagaggccgggaag
cgtgtgggaaagactcttcatgctccgctcatggaactgctgcagaaagaagaaagtctt
ggcaagaaacgacagaaagtcggattccttggatag
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