Ctenopharyngodon idella (grass carp): 127501343
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Entry
127501343 CDS
T08802
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cide00535
]
127501343
Proteoglycans [BR:
cide00535
]
Extracellular matrix (ECM) proteoglycans
Others
127501343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
DUF4959
FN3_Tor_3rd
VWA_3
Big_5
Motif
Other DBs
NCBI-GeneID:
127501343
NCBI-ProteinID:
XP_051729246
LinkDB
All DBs
Position
19:complement(19920083..19953634)
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AA seq
1863 aa
AA seq
DB search
MRVRALLILILTSVLIAHAQVPMPRRLRFRELSSDTLSVSWKEPKGAFDGYRLTYSTDSG
DERELIVSKSEPKAVIEGFDRRKEYSVKITAVRGTERSKALLGRYSGSESGSEVSDVGVP
LNQQDSVVSVRGDEIAEEDVFTCKTPAIADIVILVDGSWSIGRINFRLVRMFLESLVRAF
AVGSEYTRVGLAQYSGDPRIEWHLNAHSTKEAVIEAVKNLPYKGGNTLTGLALTYILENS
FKPESGSRPDVPKIGILITDGKSQDDVLAPAQRLRDAGIELFAIGVKNADENELRAIASP
PEETHMYNVADFSVMSSIVDGVTRSVCERVSELSKEISGVTEPYLRSLDAPSDLVTSEVT
ARSFRVSWTHAAGPVEKYRVVYYSSSGSRPEEVVVNGDENSVVLRYLNSLTEYQITVFAI
YSNSASEALRGSETTLALPTVSSLELYDITHSTMRVRWREAEGASGYMILYAPLTEGDPA
DEKEVKVSDSVTQIELEGLTPATEYTVTVYAMYGEEASDPMTAQETTLRLTPARNLRISD
VNHSSAKLSWDAASRKVKGYRIVYVKTDAVETNQVEVGPVTTVMLRNLSSVTEYTVAIFA
LYEEGQAEPLTDTFTTSVVPLPLRLQSSDVSTDSFRVTWQHAASDVSFYRLIWRPAAGGE
TKEVLINDNSNMFVITGLKPLTEYEVSLSGIYRDESESDPMEIIETTVARTTTVATTTIR
TTTAVQRLAVRNLQLRDVTTFSMRVSWDALGPNVRQYRVSYISTRGDRAEQVSMVPAGQT
SVLLQPLLSDTEYRVSVSAIYADGDGPSITRVARTLPLSAPSSLRVSEEWYNRFRISWDA
PPSPTMGYRIVYQPTSASGRALETFVGDDVNTMLIVNLLSGTEYSVKVIATYTTGSSEAL
SGRAKTLYLGVSNLNTYQVRTTSMCAQWQPHRHANLYRLILQSQLNGEKQEVRLAGSASR
HCFNDLTPNTQYTISVHAQLQDTEGPAVTTTQRTFPVSTAPPTTTSSTAPPPTLPATKEV
CRAAKADLVFLVDGSWSIGDDNFQKIIRFLYSTAGALDRIGPDGTQVAIAQFSDDARTEF
KLSSHDNKESLLDAIQRISYKGGNTKTGRAMQHVKDSVLTPVGGARRGVPKVLVVLTDGR
SQDDVLQVSQEIQAEGYVVFAIGFADADYGELVSIASKPSERHVFFVDDLDAFRKIEEKL
ITFVCEAASATCPSVPMSGSTLPGFRMMETFGLVEHLYSSVSGVSMEPGTFNSYSSYRLG
SDALLTQPTRFIHPEGLPSDYTITMLFRLLPETPQEPFALWEILNNNNEPLVGVILDIAG
KTLTFFNTDYKGDFQTVTFEGMEIQKLFYGSFHKLHIAVSKTSALVMVDCKSAGEKPVNA
AKNISTDGVEVLGRMVRSRGSKDNSAPFQLQSFDIVCSTSWARRDKCCELPSLRKEADCP
SLPRACTCTQDSKGPAGPAGPPGGPGIRGARGDRGEPGPVGPVGPVGDAGVPGAQGPPGP
PGPSGRSIRGPPGAPGETGQKGDAGPPGLQGVPGSPGSPGREGPAGARGLPGPDGPQGRV
GAPGTIGGPGAPGAPGENGPAGPRGDQGPPGPPGPKGEKGERGEVQSTSSVQAIARQVCE
QLIQSHMARYSSILNHIPSQPVSIRTVPGPPGEPGRQGSPGPQGEQGPPGRPGFPGSNGE
NGQPGARGPPGEKGEKGNPGVGVQGPRGAAGPPGPPGEGRTGSPGPSGRPGNPGSPGRPG
IPGPVGPPGPAGYCDQNACLGYNVGEPGFDDDLTDRDVPPVQLPPSSYQPYGPEAEAEAE
DDDPYGSYGSYYQPNYPPPRPVQPDDPVIAPEVEELRSPGIQRLTRSLADLRRRQPRRAA
QRT
NT seq
5592 nt
NT seq
+upstream
nt +downstream
nt
atgcgggttcgagcgctgctgatcctgatactcacatcagttctcatcgcgcatgcgcaa
gtgccgatgcccagaaggctgcgtttcagagagttgagctccgacacgctcagcgtgagc
tggaaggagccgaagggagcgttcgacggctatagactcacgtacagcactgactcagga
gatgagcgtgagctgatagtgagtaaatctgaacccaaagccgtcatcgaagggttcgac
cgcaggaaagagtacagcgtgaagatcacggccgtcagagggacggagaggagcaaagca
ttgctgggcagatacagtggatcagagtcaggctcggaggtgagtgacgtcggcgtgccg
ctcaaccagcaggacagcgtcgtctctgtgcggggcgatgagatcgctgaagaggacgtc
ttcacatgtaaaactccagccatcgccgatatcgtgattctggtggatggatcgtggagt
atcggccggattaatttccgtttggtgcggatgtttctggaaagcctcgtcagggccttc
gcggtcggttctgaatacacacgtgttgggctagcgcagtacagcggggatccgcggatc
gagtggcatctgaacgctcacagcactaaagaggccgtgatcgaggctgtgaagaacctg
ccttataaaggaggaaacacactcacaggtcttgctttgacgtatattttggagaacagc
tttaaacctgaatctggatccagacctgacgttcctaaaattgggattctgatcacggat
gggaaatcacaggacgatgttcttgctcctgctcagagactcagagacgctgggatcgag
ctgtttgctatcggggtgaagaacgcagatgagaatgagctgagagccatcgcctcgccg
ccggaggagacacacatgtataacgtggctgatttcagcgtgatgagctccatcgtggac
ggagtgacccggagcgtctgtgagcgcgtctctgaactcagcaaagagatcagcggtgtg
acagagccatatttaaggtcacttgacgctcccagcgaccttgtgacctctgaggtcacg
gccaggagcttccgtgtgtcgtggactcatgctgccgggccggtggagaagtacagagtg
gtgtattattcatccagtggatccagacccgaggaggtggtggtgaacggtgacgagaac
tctgtggtgttgaggtatctgaactctctgacggagtatcagatcactgtgttcgccatt
tacagcaactcagccagtgaagctctgagaggcagcgagaccaccttggcgctgccgacg
gtcagcagtctggagctgtatgacatcactcacagtaccatgcgtgtgcgctggcgagag
gcagaaggggcttctgggtacatgatcctgtacgcgcctctgacggagggcgaccccgcg
gatgaaaaggaggttaaagtgtctgactctgtgactcagattgagctggaaggtttaact
cctgctaccgaatacacggttactgtttacgccatgtacggagaggaagccagtgacccc
atgaccgcgcaggagaccacgcttcgtctgactcctgctcgtaatctgcgcatctcagac
gtaaatcacagctctgctaaactgtcgtgggacgcggcatctcgtaaggtcaaaggttac
cgtattgtttatgtgaagacggacgctgtggagaccaatcaggtggaagtgggtccggta
accacggtgatgctgcgcaacctgagctctgtgacggagtacaccgtcgccatctttgcc
ctctatgaggaaggacaagcagaaccgctgaccgacactttcaccaccagtgtggttcct
ctgccgctgaggctccagtccagtgacgtctccactgatagtttcagagtcacgtggcaa
cacgccgcgtctgacgtctcattctacagactcatctggagacccgcagcaggaggagag
actaaagaggttctcatcaacgataactccaacatgtttgtcatcacgggtctcaagcct
ttgactgaatatgaagtttctctgtctggaatctacagagatgaatctgagagcgatcca
atggagatcattgaaaccacagttgccagaacaacaacagttgctacaacgaccatcaga
acgactacagccgtgcagcggctggccgtcaggaatctgcagctaagagatgtgacgacc
ttcagcatgcgtgtgtcgtgggatgctctgggtccaaacgtgcgtcagtaccgagtgtct
tacatcagcactcgaggtgaccgcgccgaacaggtgtcgatggttcctgcgggtcagacc
tcggtgctgctgcagcctcttctgtcagacactgagtatcgcgtcagcgtctcggccatc
tacgccgacggcgacggaccgtccatcacgcgcgtcgctcgcacactgcctctctctgct
cccagcagcctccgcgtgtctgaggaatggtacaaccgcttccgcatcagctgggacgcg
ccaccctcgcccaccatgggctacaggatcgtctaccagcccacctcagcgtccggccgt
gctctggagacgtttgtgggtgacgatgtgaacaccatgctgatcgtcaatctgttgagc
gggacggagtacagcgttaaagtcatcgccacatacaccacgggatccagcgaagccctg
agcggacgcgcaaagacactgtatctgggagtaagtaacctcaacacgtatcaggtgcgg
acgaccagcatgtgtgcgcagtggcagccgcatcgacacgccaacctgtaccgcctcatc
ctgcagtcacagctcaatggtgagaaacaggaagtgaggttggctggctccgcctccaga
cactgcttcaatgatctcacgccgaacacgcagtacacgataagtgttcacgctcagctg
caggacacagagggaccggcggtcaccaccacgcagaggacatttcctgtgagtacggct
ccgcccaccacaaccagcagcaccgcccctccgcccacccttcctgccactaaagaagtg
tgtcgtgctgctaaagcagatctggtgtttctggtggacggatcatggagtatcggagat
gacaacttccagaagatcatccgcttcctgtacagcacagccggagctctagaccggatc
gggccggacgggactcaagtggccatcgctcagttcagtgatgacgctcgcaccgagttc
aagctcagctcccacgataataaagagagcctgctggacgccattcagagaatctcatat
aaaggaggaaacacaaagacaggaagagccatgcagcatgtcaaagactccgtgttgacg
ccggtgggcggagccagaaggggcgtgcctaaagtcctggtggtgctgacggacggccgt
tcccaagacgacgtcctccaggtttcccaagagatccaggcagaaggttatgttgtgttt
gccatcggttttgccgatgctgattacggcgagctggtgagtatcgccagcaaacccagc
gagagacacgtgttcttcgtggacgatctggacgctttcagaaaaatcgaagagaaactg
atcaccttcgtttgtgaagctgcttcagcaacgtgtccatcagttcccatgagcggcagc
actttaccagggttcaggatgatggagacgttcgggctggtggagcatctgtacagcagc
gtgagcggcgtgtcgatggagccggggaccttcaacagctacagcagctacagactcggc
agtgacgcgctcctgacgcagcccaccaggttcatccatccggagggtctgccgtcagac
tacaccatcaccatgctgttccggctgctcccagaaaccccacaggagccctttgcattg
tgggaaatcctcaacaacaacaacgagccattagtgggagtcattctggacattgcagga
aagactctgacctttttcaacaccgattataagggtgattttcagacggtgacgtttgag
gggatggaaatccagaaactcttctatggcagttttcacaagctgcacatcgcagtgagt
aagacctcggctctggtgatggtcgactgtaaatcggcaggagagaagcctgttaacgca
gccaaaaacatcagcactgacggggtggaggttctcggccggatggttagatccagaggc
tccaaagacaactctgctccgtttcagctgcagtcctttgatatcgtgtgcagcacatca
tgggctcgacgagacaaatgctgcgagctgcccagcctgaggaaggaagccgactgtccg
tctctcccacgcgcctgtacctgcactcaggacagtaagggccctgctggccccgccgga
cctcctggaggtcctggtatcagaggagccagaggagatcgaggtgaacccggccctgtg
ggtcctgttggtccagtaggggacgctggagttccaggagctcaggggcctcccggccct
ccggggcccagtggacgctccatcagaggccctccgggcgctccgggtgagacgggacag
aagggagatgcgggtcctccagggctgcagggtgttcccggctcgcctggctctccggga
cgtgaagggcctgcaggagcccggggtctgccaggtccagacggtcctcagggacgagtg
ggagctccgggaactataggaggtccaggagcccctggggccccaggagaaaatggccct
gcaggacctagaggagaccagggtcctccgggacccccggggcctaaaggagagaagggt
gagaggggtgaagtccagtccacgtcttctgtacaagccatagcgagacaagtgtgtgag
cagctgatccagagtcacatggcgcgctacagttccattctgaaccacattcccagccaa
ccggtgtcgatccgcaccgtccctggaccgccgggagagccgggccgacaggggtctcca
ggacctcagggagagcagggaccacctggacgacctggattccctggcagtaatggagag
aatggccagcctggtgccagaggccctccaggtgagaagggagagaagggtaatccaggt
gtgggtgtgcagggaccaagaggagctgccggacctccaggaccgcctggtgaagggagg
acaggaagtccaggtccatctggtcgccccggtaaccctgggagtcccggcagacccgga
ataccaggaccagtgggtccaccgggaccggccggatactgtgaccagaacgcctgcctc
gggtacaatgtgggagaaccgggctttgatgacgacctcactgacagagatgttcctcca
gttcaactgccgcccagctcgtaccagccatacggaccggaggccgaggccgaggccgag
gacgacgacccctatggaagctacggctcctactaccagcccaactaccctccgcctcgc
cccgttcagcccgacgaccccgtcatagcgccggaggtggaggagctgcgctcgccgggc
atacagcgactgacgcgcagcctcgcagacctgcgcagacggcagcctagaagagcagct
cagaggacgtaa
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