Ctenopharyngodon idella (grass carp): 127502000
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Entry
127502000 CDS
T08802
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04140
Autophagy - animal
cide04142
Lysosome biogenesis
cide04145
Phagocytosis
cide04148
Efferocytosis
cide05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
127502000
04142 Lysosome biogenesis
127502000
04140 Autophagy - animal
127502000
04148 Efferocytosis
127502000
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
127502000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cide04131
]
127502000
Membrane trafficking [BR:
cide04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
127502000
Hops complex
127502000
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
zf-RING_Vps41
aq_1631
zf_RING_Vps8
zf-RING_16
zf-RING_11
zf-ANAPC11
DUF2175
zf-C3HC4_2
zf-rbx1
KNOX2
DUF5600
DUF1664
DUF4446
zf-RING_5
ANAPC4_WD40
zf-RING_UBOX
LETM1_C
Motif
Other DBs
NCBI-GeneID:
127502000
NCBI-ProteinID:
XP_051730337
LinkDB
All DBs
Position
20
Genome browser
AA seq
974 aa
AA seq
DB search
MASILDQYEDSQNIRQHSRVSAANIGITHSGFVNVRLEEEKPIFNKQRIDFSPPEKINHF
SVCNNQLCMSLGKDTLLRIDLGKPDQPNQIELGRKDDSKVHKLFLDPTGSHLVISLTTNE
CVYLNRNTQKVRSLSRWRGHLIESIGWNKLIGSETNTGPILVGTSQGIIFEAEISASEGS
LFNTNPDQYFKQVHSLEEDGKPAPVCCLEVERGLESKYFIVATTRKRLFQFVGKLAEGSE
QQGFSSIFSQNQDLLPSFQEFPVNMGYSEITFYTSKLRSCPKTFAWMMGNGVLYGQLDYV
RPDSLLSDVQVWEYTQDIDLNLVKPISIVLTQFHFLLLLPDRVRGICTLNGQVVHEDVFP
DKFGMLKKMIKDPITGLVWIYTEKAVFRYHIQREARDVWQMYMNMNKFDLAKEYCKDRPE
CLDMVLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLIKKLISL
KPSERTQITLLVTWLTELYLNRLGQLEADDGKQHLFEETREEFRTFLKSPKHKDCFYNNR
STIYDLLASHGDVENMVYFSVIMQDYERVVSHYCQHDDYSAALDVLSKHCDDKLFYKFSP
VLMQHIPKEVVDAWIKMGNRLDPKNLIPALVNYSQMGSMQQITETIRYMEFCVYELDVKD
EAIHNYLLSLYAKHKPDALLWYLEQAGAHVSDIHYDLKYALRLCAEHGYLRACVLVYKIM
ELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNCLSSC
NLLKIEDILPFFPDFVTIDHFKEAICNSLEEYNQHIEELKKEMEEATESAKRIRDDIQEM
RNKYGVVESQEKCATCDFPLLNRPFYLFLCGHMFHYDCLFQEVIPHLSAYKQNKLEELQK
KLAATTQTTKSRHRPREEDTVSLGKGQGSREQIKSDIDDIIACECVYCGELMIKSIDKPF
IDPQKFDQEMSSWL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcatctattctggatcaatatgaagattctcagaacatccgtcaacacagccgtgtg
tcggcggctaacatcgggattactcattcagggtttgtgaatgtaagattagaagaagaa
aaacctattttcaacaagcagcgcatcgatttctcacctcccgaaaaaatcaaccacttc
tcagtgtgcaacaaccagttatgcatgagtctggggaaagacaccctgctgagaattgat
cttggaaaacctgatcagccaaatcagattgaactgggaagaaaggatgatagcaaagtg
cacaaacttttcctggatcctacaggatcacatttagtcatcagtctcaccacaaacgaa
tgtgtatacctaaaccgaaacactcagaaggtccgaagtctatcacgatggagaggccac
ctgattgaaagcataggttggaacaaattaataggctcagagaccaacactgggccgatt
ctggtcggcaccagccaaggaatcatctttgaagcggagatttctgcctctgagggcagt
ttgttcaacaccaacccggaccagtacttcaaacaggttcattccctggaggaggatggc
aagccagctccggtctgttgcctcgaagtggaacgtggcttggaatccaagtacttcatc
gttgcaaccacacgaaaacggctgttccagtttgtaggaaagctggcagagggatctgag
cagcagggtttcagctcaatcttttcccagaaccaggatctcctacccagcttccaagag
tttcctgtcaatatgggctacagtgagatcacattctacacgtcgaagctgcgcagttgc
cccaagaccttcgcctggatgatgggcaacggggttttgtatggacagctggactacgtg
cgacccgactccctactaagtgatgttcaagtgtgggaatacacacaagacatcgattta
aaccttgtcaagcccatctctatagtactcacccagtttcacttcctgctcctgcttcct
gaccgtgttaggggtatctgcactctgaatgggcaggttgtgcatgaagatgtatttcca
gataagtttggcatgctaaaaaagatgatcaaagatcccatcacggggcttgtgtggatc
tacaccgaaaaagctgtgtttcgctaccacatccagagagaggcgcgagacgtttggcag
atgtacatgaacatgaataagtttgatctggctaaagagtactgcaaagaccgaccagaa
tgcctggacatggtgctcgccaaggaggcagagcactgtttccagaacaagcgctacctg
gagagcgccaaatgctatgcgctcactcagaattactttgaggagatcgcactgaagttc
attgaggccaaacaagaggaggccttgaaagagtttttgattaagaagctaatcagcctg
aagcccagtgagaggactcagatcaccctgctggtgacctggctgactgaactctatctg
aaccgactcggtcagctggaggccgatgacggcaaacaacacctctttgaagagacccgt
gaagagttccgcacctttcttaaaagccccaaacataaagattgcttctacaacaatcgc
agcaccatctatgacctgctggctagtcacggtgacgtggagaacatggtgtatttctcg
gtcatcatgcaagattatgagcgtgttgtatctcattactgccagcatgatgactacagc
gcagctttagatgttctctccaaacactgcgatgacaagctcttctacaagttctctccg
gtcctcatgcagcacatccccaaagaggtggtggatgcgtggattaagatgggaaaccgg
ttggatccgaagaatctgatcccagcccttgtgaactacagccagatgggtagcatgcag
cagataactgagaccatccggtacatggagttctgtgtgtatgagctagacgtcaaagat
gaagccattcacaattacttactgtcgctttatgccaaacacaagccagatgccctgttg
tggtacctcgaacaagcaggagcgcacgtctctgacatccactacgacttaaaatatgcc
ttgcgcctttgtgctgaacatgggtacctgcgggcctgcgtcttggtttacaagattatg
gagctgtatgaggaagctgtggatctagctctacaagtggatgtagatttggccaagtct
tgtgctgaccttccagaggatgatgaggagttgaggaagaagctgtggttgaagattgct
cgtcatgtggttcaggaggagaaagatgtcaaaaaagccatgaactgtctgtccagttgt
aatctgcttaagattgaggacatcttacctttctttccagactttgttacaatagaccac
ttcaaggaggcaatttgtaactccctggaagagtacaaccaacacatagaggagctgaaa
aaagaaatggaggaggccacagagagtgccaaacgtatccgtgatgacatccaggagatg
aggaacaagtacggagtggtggagtctcaggaaaaatgtgccacttgtgatttccccttg
ctcaatcgacctttctatctcttcctgtgtggacacatgttccattatgattgcctcttt
caggaagtcattcctcacctctctgcctataagcagaataaattggaggagcttcagaag
aagctggcagcgaccacacagaccaccaaatccaggcacaggcccagagaggaggatacc
gtcagcttgggcaagggccagggaagcagagagcagatcaagtcagacattgatgacatc
atagcttgtgagtgtgtctattgcggtgagctgatgatcaaatccatcgacaagcctttc
atagatccacagaagtttgatcaagagatgtccagctggctctga
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integrated database retrieval system
