Ctenopharyngodon idella (grass carp): 127502031
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Entry
127502031 CDS
T08802
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cide03041
]
127502031
03016 Transfer RNA biogenesis [BR:
cide03016
]
127502031
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127502031
Spliceosome [BR:
cide03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
127502031
Transfer RNA biogenesis [BR:
cide03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
127502031
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
127502031
NCBI-ProteinID:
XP_051730386
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All DBs
Position
20:21906963..21914741
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AA seq
740 aa
AA seq
DB search
MAAFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRSAVKTGGAVFNKWQMNPYDRSPAFAIGADGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVACHDQGLCRVGWSTAQASLDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYIDVDKGHVSFSKNGNDLGLAFEISPQLKNQPFFASCVLKNAELKF
NFGDEPFKNQPKDGYVALNQASDGHVVKSSQTGSAKVSQVKSSSNAPRALIIEPSKELAE
QTLNNVNQFKKYVDNPKLRDLLIIGGVAAKEQLSVLESGVDIVVGTPGRLDDLISTGKLD
LSQVRFLVLDECDGLLTAGYTDFIMRVYNQIPQVTSDGKRLQVIVCSATLHSFDVKKISE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKADRLWERLGKSHIRTDEVHAKDDTRPGAN
TPEMWSEAIKILKGEYAIRAIKEHKMDQAIIFCRTKIDCDNMEQHFIKQGGGPDKKGHQF
SCVCLHGDRKPNERKYNLERFKKQEVKFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRADRMGLAISLVAMEKEKVWYHVCASRGKGCYNTRLKENGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKVPVDEFDGKVTYGQRRAAGGGLYTGHVDILAPTVQELANLER
EAQTSFLHLGYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttcggcgaaatgggagtaatgcctgaaattgcacaggcggtggaagaaatg
gactggctgttgccaacagacattcaggctgaatccatccctctgattctgggtggagga
gacgtgctcatggccgctgagactgggagcggaaaaactggagccttcagtattccagtc
atccaaatagtctatgagacccttaaagaccagcaggaggggaagaagggacgcagtgcg
gtgaagacaggaggggcagttttcaataaatggcagatgaacccctatgacagaagccca
gcatttgctattggtgctgatggcctgtgctgtcagagcagagagttcaaagagtggcat
ggctgtcgttcaaccaaaggagtcacaaaagggaagtattattatgaagtggcctgtcac
gatcaagggctgtgcagagtgggctggtccactgcccaggcatcactggacttgggaacg
gataaatatggatttggctttgggggaactggaaagaaatctcacaataagcagtttgat
agttatggagaggaattcactatgcacgacaccatcggatgctacatagatgtggataaa
ggccatgtgtcattctccaaaaatggtaatgatctgggtttggcttttgagatttctccg
cagctgaaaaatcagcccttctttgcttcctgtgtgctgaagaatgctgaactgaaattc
aactttggtgatgaacctttcaaaaaccaacctaaagacggatatgtggccctgaaccag
gcttcagacggtcatgtggtcaaatccagccagacaggcagtgctaaagtgagtcaggtt
aaatccagttctaacgcccccagagctctcatcattgagccgtctaaagagctggctgaa
caaaccctcaataatgtcaaccagttcaagaaatatgttgataatcccaaactaagagat
cttctgataattggaggagtggctgctaaagaacagctctccgttttagaaagtggggtt
gacattgtggttgggaccccgggcagactggatgatctcatatcaacaggaaagctggat
ttatcccaagtccgcttcctggtgctggatgagtgtgatggactcctcacagccggctac
accgacttcattatgagggtctacaaccagatccctcaggtcacctcagatggcaagaga
ttacaggtgatcgtttgttctgccacgctgcactccttcgatgtgaagaagatctcagag
aagatcatgcatttccccacatgggtggatctgaaaggagaagattctgtaccagaaacg
gtccatcacgtggtggtgccagtcaacccaaaagctgacaggctttgggagagactggga
aagagccacatcaggactgatgaagttcatgccaaggatgacacacgacctggagccaac
accccagagatgtggtcagaggccattaagattctgaagggagagtatgcgatcagagcc
attaaggagcataagatggatcaggccatcatcttctgcaggacaaagatcgactgcgac
aatatggagcagcacttcatcaagcagggaggaggtccagacaagaaaggacaccagttc
tcttgtgtctgccttcatggtgacagaaaaccaaatgagcgcaaatataacttggagcga
ttcaagaaacaggaagtaaagtttctgatttgcacagatgtggctgctagaggaatcgat
atccatggtgttccttatgtgataaatgtgactctaccagatgagaagcagaactacgtt
catcgcattggaagagttggcagagcagacaggatgggtctggctatatccctggttgct
atggagaaagagaaagtgtggtaccacgtttgtgccagcagaggaaaaggctgctataac
accagactcaaagagaacggaggatgcactatttggtacaatgagaaagagttgttgtca
gaaattgaggaacatctgaaatgtaccattactcagtgtgaacctgacatcaaagtacct
gttgacgaatttgacggcaaagtgacgtacgggcagcgcagggctgcggggggtggtctc
tatacgggccatgtggatatattggccccaaccgtacaggaactggccaacctggagaga
gaggcacaaacttccttccttcatctcggctatctacccaaccagctctttaaagcattc
tag
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