Ctenopharyngodon idella (grass carp): 127502065
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Entry
127502065 CDS
T08802
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cide03000
]
127502065
Transcription factors [BR:
cide03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
127502065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
HTH_31
DUF494
HTH_37
HTH_26
Herpes_pp85
Motif
Other DBs
NCBI-GeneID:
127502065
NCBI-ProteinID:
XP_051730544
LinkDB
All DBs
Position
20:30182904..30197660
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AA seq
462 aa
AA seq
DB search
MSHYTDEPRFTIEQIDLLQRLRRTGMTKPEIVHALDTLERLDREHGDKFGRRGPSDSNAT
NSTTSSTTPTSNNASSAIMATSSTTSTATQTQFHGNLSPSPNNSYATSPPAVLPSPVSLV
AMVQNGRDALAATPNGKLSPNRCPVNSAAAMRSYGLEGSEEDLDIDDKVEELMRRDSTLV
KEEIKAFLGNRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTTPG
ATLNMRPTPVSLDEMEWRQTPPPISSTPGSFRLRRGSRFTWRKECLAVMESYFSDNQYPD
EAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIGSFFQEATIL
ESHGIDVQSPGGHSNSDDVDANDYNEQGCDVTYFEKRSVNRPFGYYRLEPTSPTQDDAGN
HADHQDPISLAVEMAAVNHSILALSRPGGVASEIKTEALDDD
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtctcactacacagatgagccacgcttcaccatcgaacagatcgacctgctccagaga
ctgcggcgtacaggtatgaccaaacctgagatcgtgcacgccttagacaccctggagcga
ctcgaccgcgagcacggggacaaattcggccggcgcggcccgtcagactccaatgccacc
aacagcaccacctccagcactacacccacctcaaacaacgctagcagtgccattatggca
acttcctccaccacttccacagcgacacagacgcagttccacggtaacttatcgccgtca
cccaacaacagttacgccacatccccgcccgcagtcttaccctcgccagtctctctggtc
gccatggtgcagaatgggcgggacgctttggcggccacacccaatgggaaactatcaccg
aaccgttgcccggtaaacagcgcggcggcaatgaggtcgtacgggctggaggggtcagag
gaggacctggatatagacgacaaggtggaggagctcatgaggcgggacagcaccctggtg
aaggaggaaatcaaagcctttctgggcaacagacgtatctcgcaggctgtggtggctcag
gtcacaggcatcagtcagagcagaatctctcactggctcctccagcaaggctcagatctc
agcgaacagaagaaacgagctttctaccgctggtaccagcttgagaagaccacgccaggt
gccacactaaatatgcgacccacccctgtatctctggatgagatggagtggcgtcagact
ccgccccccataagctccacccctggaagcttccgtctgcgcagaggcagtcgattcacc
tggaggaaggaatgtctcgctgtgatggagagttatttcagtgataatcagtatccagat
gaagccaaacgagaggagatcgccaatgcctgcaatgctgttattcagaaaccaggaaag
aagttgtctgacttggaaagagtcacgtccttaaaagtgtacaactggtttgccaatcga
cgcaaagagatcaagaggagggccaatattgggtcttttttccaagaagccacaatcctg
gaaagccacggaatagatgtgcagagtcctggaggacactccaacagcgacgacgtcgac
gctaacgactacaacgagcagggttgtgatgttacctattttgaaaagagaagtgtgaac
agaccttttggttactaccgtctggaacccacctcaccaacacaggatgacgccggtaat
cacgcagaccaccaggaccccatctctctcgccgtggagatggcagctgtcaatcacagc
atcctcgccctgtcccgcccaggaggcgtggccagtgaaatcaaaacagaagcactggat
gatgactga
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