Ctenopharyngodon idella (grass carp): 127502086
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Entry
127502086 CDS
T08802
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha b
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04137
Mitophagy - animal
cide04140
Autophagy - animal
cide04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127502086
04137 Mitophagy - animal
127502086
04148 Efferocytosis
127502086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cide03000
]
127502086
Transcription factors [BR:
cide03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
127502086
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
127502086
NCBI-ProteinID:
XP_051730595
LinkDB
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Position
20:complement(13981604..13999982)
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AA seq
774 aa
AA seq
DB search
MDTGVVTEKKRVSSERRKEKSRDAARSRRGKESEVFYELAHQLPLPHNVTSHLDKASIMR
LTISYLRMRKLLSSDDTDKENELEGQLNGFYLKALEGFLMVLSEDGDMVYLSENVSKSMG
LTQFDLTGHSVFEFSHPCDHEELREMLVHRTVSKKTKEQNTERSFFLRMKCTLTSRGRTV
NIKSATWKVLHCAGHVRVQERSEGSGDSGFKEPPLTYLVLICDPIPHPSNIEVPLDSKTF
LSRHTLDMKFSYCDERITELMGYEPDDLLNRSVYEYYHALDSDHLTKTHHNLFAKGQATT
GQYRMMAKKGGFVWVETQATVIYNPKNSQPQCIVCVNYVLSGIVEGDIVLSLQQTMTEPK
AVEKESQKVEDEASEVDMLKLFKPENLKCPMECSDLYEQLKEEPEALTVLAPAAGDTIIS
LDFNNSDSDMQLVKDVPLYNDVMLPSSSEKLPISLSALTPSDPTPALSKLETRAEDFPFS
SASDRVPDSANTPSTSGLGSSGPNSPMDYCFQVDSDISSEFKLDLVEKLFAIDTEAKTPF
TNQAIEDLDLEMLAPYIPMDDDFQLRVPSPLDPLPSSSLSVSAMSSLFQPLPSPASPASS
SSIAVKKEPSSRAPSPLHLLQEVCSAPVSPFSGSRDTSPARSPTPQSSNQLINRELSPKM
LAIQNVQRKRKLEEVTSLSEAVGLGALLQSVDSAIEPGKRAKVLEVKGSSVLGGNRTILI
LPSDVASRLLCSSLESSGGLPQLTRYDCEVNAPVQDRHHLLQGEELLRALDQVN
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atggatactggagttgtcactgaaaagaaaagggtgagctcggagcgcaggaaggagaag
tccagggatgcagcgcgatctcgcaggggaaaggagtccgaggtgttctacgagttagcg
caccagcttcccctgccacacaatgtcacttcccacctggacaaagcctccatcatgagg
ctgaccatcagctatctgcgcatgaggaagctgctcagctctgatgacaccgacaaagag
aatgagctggaaggtcagttgaacggcttttatctaaaggcactggagggtttcctcatg
gtcctgtctgaggatggagacatggtttatctctctgagaatgtcagcaagagcatgggc
ctcacacagtttgatctgactggtcacagcgtctttgaattctcacacccatgtgaccat
gaggagttgagagagatgctggtccataggacagtatccaaaaagaccaaggaacaaaac
acagagcgcagcttcttcctgcggatgaagtgcacactcactagtagaggacgcactgtc
aatatcaagtctgctacatggaaggttcttcactgcgctggtcatgtccgtgtgcaggag
cgcagcgagggttcgggagactctggctttaaagagccccctctgacctaccttgtgctc
atctgtgaccccattcctcatccctcaaacatcgaggtgcctctggacagcaagaccttc
cttagccgtcacactctggacatgaagttctcgtactgtgatgaaaggatcaccgagctg
atgggatatgagccagatgatctgctgaacaggtcggtgtacgaatactatcatgccctg
gattcagatcacctcaccaagacacatcacaacttgtttgcaaagggccaggctaccaca
ggccagtaccgcatgatggctaagaaaggtggttttgtgtgggtggagactcaggccacc
gttatctacaatcccaagaattcacagccacagtgcattgtgtgcgtcaactacgttctc
agtggcattgtggagggggacattgttctgtccctgcagcagaccatgacagagcccaag
gctgtagaaaaagagagccagaaagtggaagatgaggcctctgaggtggacatgctcaaa
ctcttcaagccagaaaacctgaagtgtcccatggagtgctctgacctttatgagcagctg
aaagaggaacctgaggccctcactgtgttggcgcctgcagcaggagacaccatcatctct
ctggacttcaacaactcagactctgacatgcagctggtgaaggatgtgcccctgtacaat
gatgtcatgctgccctccagcagtgagaagctgcccatcagtctgtctgctctgacaccc
agtgaccccaccccagctctgtccaaacttgagaccagagcggaagacttccctttcagc
tctgcctctgatcgtgttccagactccgcaaacacgccctccacatctggactcggctcc
tcagggcccaacagccccatggattactgtttccaagtggactcagacatcagttctgag
ttcaaactggacctggttgaaaaactttttgctattgataccgaagcaaagacccccttt
accaaccaggccatagaggatctcgacctagagatgctggctccatacatcccaatggat
gacgacttccagctgcgtgtcccctctccactggacccgctcccctccagctctctctct
gtttctgccatgagctccctgttccagcccttgccctcccctgcatctccagcctcttcc
tccagcatcgcagtgaagaaggagccatcgtcacgggccccttcgcctttgcatcttctg
caggaggtgtgcagtgctcctgtctcgcctttcagcggcagtcgggacacttcccccgct
cgatcccccaccccacagagcagcaatcagctcattaacagagagctgtctccaaagatg
ttagccatccagaatgtccaacggaagagaaagctggaggaagtgacatcactttctgag
gctgttggactgggtgctttgcttcagagtgtggacagtgctatagagcctggaaaaagg
gcaaaggttttagaagttaaaggatcgagtgtgctcgggggaaacagaaccattcttata
ctgccctctgatgtggccagtcgtctgttgtgcagttctttagagagcagcggcgggctg
cctcagctaacacgttacgactgcgaagtcaacgctcccgtgcaggaccgccatcatctg
ctccagggagaggagctcctgcgtgctctggaccaagtcaactga
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