Ctenopharyngodon idella (grass carp): 127502097
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Entry
127502097 CDS
T08802
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127502097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127502097
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127502097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
127502097
NCBI-ProteinID:
XP_051730611
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Position
20:complement(15555706..15594901)
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AA seq
510 aa
AA seq
DB search
MSTREVEKTADESADDETDWLYGDDNFDEEETTEKEVFSALIGDVDGVNELSYQESESDS
DDDVCVTIGDIKTGGSQGSSFGSSSISLNIKSSVSGSKSRGLDLDAEGSVLQVDVESFEE
KPWRKPGADLSDYFNYGFNEDTWKAYCDKQRRLRMSLEILSLASSSKLMVHQSSSDLSEY
SSRKSSGSINVIGGQAGTISRVEGRRRHSADENNIQVVSEQSSDTKLSSPKLLPFFPPNI
PPPPFPPPSVSTTPPLIPPPPPPPPGFPLPPGAPPPMLPTLDRLLLHRYWRERQRRCSRQ
RKQEHSRSLYRQKREKKKDRERKRETKSSGRLAGGYDRRSAPPYPFTAGVYSPVVGLASW
PGVIDSDKAWENYTRHNKERVREKTRERGHKTERERERERYREHSPSSQDHRNEEERVSR
HRDHSHYGTERHRESSGREGARDRHRERRHRDRNEQHRSSRSGSSRRRHDSDDADSHRRH
RHKRSRHNREILEPSEECSADQENQSEATE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaagagaggtagagaaaacagctgatgagagcgctgatgacgagacggactgg
ctttatggagatgacaattttgacgaagaagagacaacagaaaaggaagtgttcagtgct
ctgattggcgatgtggatggtgtgaatgaactcagctaccaggagagtgaatcagacagt
gatgatgatgtctgtgtgaccatcggtgacattaaaacaggcggatctcagggctcgtca
tttggttcgagttccataagtctgaacataaagtcctctgtatcaggctccaagtctaga
gggctggatctggatgctgaaggcagtgtcctgcaggtggatgtggagtcctttgaggag
aagccatggaggaaaccaggtgcggatctgtctgactactttaattatggttttaatgag
gacacctggaaggcgtactgtgacaaacaaagacgacttcgcatgagcctggagatcctg
agcctggcgtcatccagcaaattaatggtgcatcagagttctagtgatctgtctgaatac
tcatccaggaagtcgagcggttcgattaatgttatcggaggacaagcagggaccatcagt
cgagtggaaggccgaagacgtcacagcgctgatgaaaataacatccaggtcgtttcagag
caatcctctgacacaaagctatcctccccaaagctgttgcccttctttcctccaaacatc
ccacctccacctttccctcctccctccgtcagcaccacacctccccttataccaccacca
ccaccaccaccacccggtttcccattacctcccggtgcccctccacctatgctaccaaca
ttagataggttgctgttgcatagatactggagagagagacagaggagatgtagcagacag
agaaagcaagaacatagcaggtcactatacaggcaaaagagggagaaaaagaaagacaga
gaaagaaagagagagacaaagagtagtggacgtttggcaggaggctatgatcgacgctca
gctccaccttacccctttactgcaggtgtgtactcacccgtagtgggcttggcttcctgg
ccaggtgtgatagacagtgacaaggcatgggaaaactatacccgtcataacaaagaaagg
gtgagagagaaaaccagagaaagagggcacaagacagagcgagagcgggaaagagagcgg
tatcgagaacacagtccctcctcccaagaccacagaaatgaggaggagcgtgtatctcga
cacagggatcacagtcattacgggaccgagaggcacagagaaagctcgggaagagaagga
gcgagggacagacatcgagaaagaagacacagagacaggaatgaacaacacagatcctca
cgcagtggcagcagcaggaggcgtcatgatagtgatgacgcagatagccacaggagacac
aggcacaaacgctccagacacaaccgagaaatccttgagcccagcgaggagtgcagtgcg
gaccaggagaaccagtcagaggccacagaataa
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