Ctenopharyngodon idella (grass carp): 127502170
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Entry
127502170 CDS
T08802
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1
KO
K28076
finTRIM family protein
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cide04121
]
127502170
Ubiquitin system [BR:
cide04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
127502170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
RING_XB3-XBAT31
zf-RING_2
ANCHR-like_BBOX
U-box
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
127502170
NCBI-ProteinID:
XP_051730764
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All DBs
Position
20:3317221..3323531
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AA seq
700 aa
AA seq
DB search
MAEASISVGQDEFSCPVCLDLLKNPVTIPCGHSYCMSCITGCWNQDDQKGVNSCPQCRQT
FTPRPALGKNTILADMVEKLKKTKLQAAVPAGSGDVECDVCTGRKHKAVKSCLVCLESYC
QTHFERHEEFRPGKPHKMIDATGRLQQMICPQHGKQLEIYCRTDQCCICYLCTVDEHKNH
DTVTATAERTEKQKHLEQTQRNFQKRIQQREKDLQELKEVVQTHKRSTKAEVKNSERIFA
ELIRSIERSRSRVTQLIKSREKTVVRSAEKLMKQMKQETDDLKRQDAEIEQLSHTEHHIL
FLQSSQYFPFPPESTNIFKIVINTRIHYDDIRKSVSLLQQKVEDFCKEEIGKISGRVRHI
EVNFSSEEEEDEEEDEDEEEDEEKDEDEDEKEDEDEEEVEDEDEKKEEDEDEEEDEDEDE
EEVEDEDEKKEEDEDEEEDEDEDEEEVEDKDEKKEEDEDEEGDEDEEGDEDEEDLQLSQS
LSRFFRKPGSQPRPSTTLESWSRSFRVPGSQPRPSTTLESLSRSFRDPGSQPRSSTTLES
RSRNFRDPGSQPRPSTTLESLSRSFRDPGSQPRSSTTLESRSRNLRDPRSQPRSSRTLES
RSRNFRDPGSQPRPSTTLESLSRSFRDPGSQPRSSTTLESRSRNFRDPGSQPRSSTTLES
RSRNFRDPGSQTLHNIRVMVQKLQKSRVEGRSRTLEKMAT
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagccagtatttcagtgggacaggacgagttcagctgtccagtgtgtctggat
ctactgaagaatccagtgaccattccttgtggacacagttactgtatgagctgtattacc
ggctgctggaatcaggatgatcagaagggagttaatagctgccctcagtgcagacagacc
ttcactccaagaccagctttaggtaaaaacaccattttggctgacatggtggaaaaactg
aagaagactaaactccaagctgctgttcctgctggatctggagatgtggagtgtgacgtc
tgcactggaagaaaacacaaagctgtcaagtcctgtctggtgtgtctggaatcttactgt
caaactcattttgaacgtcatgaagaatttcgcccaggaaagccacacaaaatgattgat
gccactggacgactccagcagatgatctgtcctcaacacggtaaacaactggaaatctac
tgccgcactgaccagtgctgtatttgttacctgtgtacagttgatgagcacaaaaaccac
gacactgtaacagctacagcagagaggacagagaagcagaaacatctggaacaaacacaa
agaaacttccagaagagaatccagcagagagagaaagatcttcaggagctgaaagaggtt
gtgcagactcataagcgctccacaaaggcagaagtaaagaacagtgagaggatctttgct
gagttgatccgctccattgagagaagccgatccagggtgacacagctgatcaaatctcgg
gaaaagactgtagtgagatcagctgaaaaactcatgaagcaaatgaagcaggagactgat
gacctgaagagacaagatgctgagattgagcagctttcacacacagagcatcacatcctt
ttcctacagagttcccagtatttcccatttccccccgaatcaacaaatattttcaagatt
gtcatcaacactcgcatccattatgatgatattagaaaatctgtctctctgctacaacag
aaagttgaggatttctgcaaagaggagataggaaagatatctggtagagtgagacacatt
gaagtcaatttctcatctgaggaagaagaggatgaggaggaagatgaggatgaggaggaa
gatgaggagaaagatgaggatgaggacgagaaggaagatgaggatgaggaggaagttgag
gatgaggacgagaaaaaagaggaagatgaggatgaggaggaagatgaggatgaggacgag
gaggaagttgaggatgaggacgagaagaaagaagaagatgaggatgaggaggaagatgag
gatgaggacgaggaggaggttgaggataaggacgagaagaaagaggaagatgaggatgag
gagggagatgaggatgaggagggagatgaggatgaggaggacttacaattgtcacagtca
ttgtccaggttcttcagaaaaccaggctcacagcccagaccctccacaacattagagtca
tggtccaggagctttagagtgccaggctcacagcccagaccctccacaacattagagtca
ctgtccagaagcttcagagatccagggtcacagcccagatcctccacaacattagagtca
cggtccaggaacttcagagatccagggtcacagcccagaccctcaacaacattagagtca
ctgtccagaagcttcagagatccagggtcacagcccagatcctccacaacattagagtca
cggtccaggaacttgagagatccaaggtcacagcccagatcctccagaacattagagtca
cggtccaggaacttcagagatccagggtcacagcccagaccctccacaacattagagtca
ctgtccagaagcttcagagatccagggtcacagcccagatcctccacaacattagagtca
cggtccaggaacttcagagatccagggtcacagcccagatcctccacaacattagagtca
cggtccaggaacttcagagatccagggtcacagaccctccacaacattagagtcatggtc
cagaagcttcagaaatccagggtcgaggggcgctcgcggaccctggagaagatggccacc
taa
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