Ctenopharyngodon idella (grass carp): 127502361
Help
Entry
127502361 CDS
T08802
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127502361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127502361
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127502361
U7-dependent histone pre-mRNA processing factors
127502361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Beta_lactamase3
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
127502361
NCBI-ProteinID:
XP_051731228
LinkDB
All DBs
Position
20:30293578..30309097
Genome browser
AA seq
787 aa
AA seq
DB search
MTSIIKLTALSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDSLKRYVHQVDAVLL
SHPDHLHLGALPYAVGKLGLNCTIYATXPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYAVDFNHKR
EIHLNGCSLETVSRPSLLITDSFNASYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLADLSRVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTT
PGTLARYLIDNPGEKRMDLEIRKRCRLEGRELEEYLEKEKMKKEAAKKLEQAKEVDLDSS
DESDMEDDLEQPVVVKTKHHDLMMKGEGGRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRPEEFLVPELQATEEEKSKLESGLTNGDEPMEQDLSDVPTKCTSTTQTLEIRARVSYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAESCKAFSGKDIKVYMPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVEKVDTGVIAEMGEAKEDTED
GEPAMDVTPDLSTEPSVTANQRAMKTLFGEDDREISEESDVIPTLEPLPAQEVPGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTEAGRICLEGCHCDDYYRIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccatcatcaagctgacggctctatccggagtccaagaggaatcggctctgtgt
tacctgttgcaggtggacgagttccgtttcctactggactgtggctgggatgaaagtttc
tccatggacatcatagattccctgaagcggtatgtccatcaggtggatgcagtgctgctc
tctcaccctgatcatctgcatctgggcgctttaccgtacgctgtgggcaaactggggctc
aactgcaccatctacgccaccnatcccgtctacaagatgggccagatgttcatgtacgat
ctctatcagtctcgacacaacacagaagatttcactctgttcacactggatgatgttgat
tcagcttttgacaaaatccagcagctgaaatactctcagatcgtcaacctaaaaggaaaa
ggtcacggtctgtccatcaccccacttcctgcgggtcacatgattggtggcactatctgg
aaaatagtgaaggatggtgaggaagagatcatctatgctgtggatttcaaccacaagagg
gagattcatcttaacggctgctccctggagaccgtcagcagaccgtctctcctcatcaca
gactccttcaacgcctcgtatgtacagcctcgcaggaaacaacgtgacgagcaactgctc
accaatgtcatggagactctgcgtggtgacgggaacgtgctgattgccgtggatacggca
ggaagagtgctggagctggctcagctcctggatcagatctggaggaccaaagacgcagga
ttgggcgtctactcgctcgccctgctcaacaacgtcagctacaacgtggtggagttctca
aagtcccaggtcgagtggatgagcgataaactgatgcgatgcttcgaggacaagcggaac
aaccctttccagttccgccacctctcgctctgtcacagcctggccgatctgtcccgcgtg
cccagcccgaaggtggttctgtgcagtcagcccgatctggagtcgggtttctcacgagag
ctcttcatacagtggtgtcaggacgccaagaactcagtcatcctcacctacaggaccaca
ccaggaacactggcccgctacctcatagataacccgggggagaagaggatggacctggag
ataagaaaacgctgccgactggaaggacgagaactagaggaatacttggagaaagagaaa
atgaagaaagaagctgccaaaaaactggagcaggcgaaagaggtggacttagactcgagc
gatgagagtgatatggaggacgatctggagcagccggtggtggtgaagaccaaacatcac
gacctgatgatgaagggcgagggcgggaggaagggcagcttcttcaaacaggccaagaag
tcctaccccatgttccctacacacgaggagcgaatcaaatgggatgagtacggagaaatc
atcaggccagaggagtttctggttcctgaactccaggccactgaagaggagaagagcaaa
ctggagtctggactaaccaacggagacgagcccatggagcaagacctgtccgacgtcccc
accaaatgcaccagcactacacaaacactagagatcagagctcgagtgtcgtacatcgat
tacgagggccgttctgacggggactccattaagaagatcataaaccagatgaaacccaga
cagctagtcatcgttcacggcccgcctgaggccagtcaggacctggctgagtcctgcaag
gccttcagcgggaaggacatcaaagtttacatgccaaaactgcaggagacggtggatgcc
accagcgagacccacatttaccaggtcaggctgaaggactctctggtcagctcgctgcag
ttctgtaaagccaaagacacagagctggcctggatcgatggcgttctggacatgcgggtg
gaaaaagtggacacgggtgtcatcgcggagatgggagaagcgaaagaggacacggaggat
ggagaaccggccatggatgtcacaccggacctgtcgactgagcccagtgtcacagctaac
cagcgggccatgaagactctgtttggagaggatgacagggagatctcagaggagagtgac
gtcatacccacgctggagccgctgcctgctcaggaggtcccaggtcatcagtctgtgttc
atcaacgaacctcgactgtcggacttcaagcaggttctgctgcgtgaagggatccaggcg
gagtttgtgggcggagttctggtgtgtaataatctggtcgctgtcaggaggacggaagcg
ggccgcatctgtctggaaggctgccattgtgatgactactacaggattcgtgagctgttg
tatcagcagtacgctgtagtttag
DBGET
integrated database retrieval system
