Ctenopharyngodon idella (grass carp): 127502400
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Entry
127502400 CDS
T08802
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127502400
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
127502400
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
DUF5816
Zn_ribbon_6
Motif
Other DBs
NCBI-GeneID:
127502400
NCBI-ProteinID:
XP_051731281
LinkDB
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Position
20:complement(19824309..19832907)
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AA seq
575 aa
AA seq
DB search
MDEELTAEYSEPCGQCAAVDWGVSDEGHFFCNNCHNVIEKTKVVFDESSLHSKNSRVSSF
KKSKRKREEDEREWMVCEGFQFILKHQAKALVGLGVCMKFETEVVWNFWKRYLQNTEQAF
TENPVYTPRFTMYKKKKKKKSESESDIQSELSCHGSETASDASGQLSCSGYTSEEQSSLD
SALYQHSYPLMTMPRTLALCHLALLWVREAITLTDLLRLVSERRVPYIDIQDVFPQEMRL
FGRDVEVFRVQKLPLYSVVHREALLLAKVMKLPSFPTVSQDCLLHPLPLTVRYLLEANLP
DALHVWVHKVIKGAGMDDDSYLTFNPNRESPYLLRYEIQAVAVIIVTMKLLFKLDDRVEW
KLSEVVAQKKKTEVFRLDRWFAIVQPVLEKARQNEEREEALRKWKPTNPFITSLGRKYLI
MKKRRVADYLEHRFRRLTDSASKQLPSTTNPHSSFRFSWGNEEGSDGPSMYNSCLVCTFN
KDGVKYLTNRKYWHPELRLCVSKSCGDHFPEVEPWLPRMYSWVLDLFSFILGVRQAEVHK
AVLDVERRFLRRNHSAFKWTYKSVLKQKIKSKTGN
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagagttaactgctgaatacagtgagccatgtggccagtgcgctgctgtggac
tggggagtttccgatgagggtcacttcttctgcaataactgccacaatgtgatcgagaaa
acgaaggtggtgtttgatgagtcctcccttcatagtaaaaacagcagggtctcatcattt
aagaaatccaagagaaagagagaggaggatgaacgagagtggatggtatgtgagggattt
cagttcatcttgaaacaccaggccaaggctttggtcggtcttggtgtttgcatgaagttt
gagacagaagttgtatggaatttctggaagagatacctgcagaacacagagcaagctttc
acagaaaatccagtgtacactccaagatttacaatgtacaagaagaagaagaagaagaag
agtgagtcagagtctgacattcagagcgagctgtcttgtcacggtagtgagactgcttca
gatgcttcaggacagttgtcatgctcaggttacaccagtgaagaacagtcatctcttgac
tctgctctataccaacattcataccctcttatgaccatgccacggacgctggccctgtgc
catctggctctgctttgggtccgagaggccatcactctgactgacttactgaggttggtc
tcagagagacgtgtcccttatatagacattcaagatgtttttccacaggagatgagactg
tttggaagagatgtcgaagtctttcgagttcagaaacttccgctctactcagtggtccat
agagaagctttgttgctggctaaggtcatgaaattaccttccttcccaacggtttcccag
gactgccttctccacccacttccactcactgtccgatatctgctagaagcaaacctccca
gatgcccttcatgtttgggtccacaaggttataaaaggggcaggtatggatgatgactcc
tatctgacctttaaccccaacagagagagcccttatctcttgcgctatgagattcaggca
gtagctgtcatcattgtcaccatgaagctccttttcaagttggatgatcgtgtggagtgg
aagttatctgaggtagtggcccagaagaagaaaacggaagtcttcaggttagacaggtgg
tttgcaatagtacaaccggtcttagagaaagccagacagaatgaggaacgagaagaagcc
ctccggaaatggaaacccactaatcctttcattacatctttgggcagaaagtacttaatc
atgaaaaaaagacgcgtggctgattatttggagcacagatttcgtaggttaaccgactct
gcatcaaaacaactgccttccaccacaaaccctcactccagctttcgcttcagctgggga
aatgaagagggttcggatggacccagtatgtataacagttgtttggtctgtaccttcaac
aaagatggggtcaagtacctcaccaaccgaaaatactggcatcctgaactgaggttatgc
gtatctaagtcttgcggtgatcatttccctgaagttgagccctggttgcccaggatgtac
tcatgggtccttgatcttttctctttcattctgggggtccgtcaggcagaagtgcacaaa
gcggttctcgatgttgagcgtcgcttcttgagaagaaatcattctgcgtttaaatggact
tataaatccgtcctaaagcaaaaaataaagtccaaaactggaaattga
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