Ctenopharyngodon idella (grass carp): 127502959
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Entry
127502959 CDS
T08802
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127502959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127502959
03019 Messenger RNA biogenesis [BR:
cide03019
]
127502959
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127502959
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127502959
U7-dependent histone pre-mRNA processing factors
127502959
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
127502959
NCBI-ProteinID:
XP_051732417
LinkDB
All DBs
Position
20:complement(19887589..19898767)
Genome browser
AA seq
689 aa
AA seq
DB search
MATKRKADVPVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCAQGQRVSGILVKKNFSYHILSPSDLSNYTELAMSTVKQTQAIPFTGPFPLLLNQLRHL
TGDVEEIETSEKSTLRVFNSITVVHDQNLVVLEWFANPLNDMYADAVTTVVLEVQSNPKA
QKVVQPQEKKMDVNVFQYRLLKMFQDMFGEECVHHKDKNCLAVSVDEKTVYINLETRAVY
EESSSEDDSLREMVELAVQRLYEAMNPVM
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaaacgtaaagcggatgtgccagtgcctgcagaagagagcgatcagcttctc
ataagaccactaggagctggtcaagaggtgggcaggtcttgtatcatcctagagttcaag
ggccgtaaaatcatgctggactgtggcatccaccctggactggagggcatggatgcattg
ccttacattgatctgatagacccagctgagattgacctgcttctcatcagccattttcac
ttggatcattgtggagccttgccatggtttttacagaagacaagttttaaagggaggact
ttcatgactcacgccaccaaagccatttatcgctggttgctttcagactatgtgaaagtc
agcaacatctcagcggatgacatgctgtacacagagaccgatttagaagaaagcatggac
aagatcgagaccatcaacttccatgaagtgaaagaggtggccggcatcaagttttggtgt
taccatgcaggtcatgttttgggagcagccatgttcatgattgagattgcaggagtgaag
ctactgtacacaggagatttctcacgtcaagaagacagacatctcatggcagctgagatt
cccagcgtcaaaccagatattctcatcacagagtctacatatggcacacacatccatgag
aagagagaggagagagaggctcgtttctgtaacacggtccatgacatagtgaaccgtgag
ggccgctgtctcatccctgtgtttgctttgggtcgggcccaggagctgctgctcattcta
gatgaatattggcagaatcaccctgaactccatgacattcctatctactatgcctcctcc
ctggctaagaagtgcatggctgtgtaccaaacctacgtgaacgccatgaacgacaagatc
cgcaaggccatcaatattaacaacccttttgtcttcaagcatatcagcaatctcaagagc
atggaccacttcgatgacatcggccccagtgtggtgatggcatctccaggtatgatgcag
agcggcctttccagagagctttttgagagttggtgcactgacaagagaaacggcgtcatc
atagcaggttattgcgtggaaggaaccctcgccaagcatatcatgtctgagccagaggag
atcaccaccatgtcaggacagaagcttcctctgaagatgtccgtggactatatctccttc
tctgctcatacggactaccagcagaccagcgagttcatccgagctctgaaacctcctcat
gtgatcctggttcatggagagcagaatgagatggctcgattgaaagccgccctgattaga
gagtatgaggacaatgatgaggttcacatcgaggtgcacaaccctcgtaacactgaagcc
gtcacgctgaacttcagaggagagaaactggctaaggtgatgggctctcttgcggataag
aagtgtgcacaaggtcagagggtctctggcatcctggtgaaaaagaacttcagttatcac
atcctctccccctctgacctctccaattacactgagctggccatgagcacagtgaaacag
actcaagccattcctttcactggcccttttcccctgcttttgaatcagctacgccacctg
acaggtgacgtggaggagattgagacgtcagagaagagcacactaagagtctttaacagc
atcacagtagttcatgatcaaaacctggtcgtgttggagtggtttgccaaccctctgaat
gacatgtacgctgatgccgtcaccacagtggtgctggaggtgcagtcaaaccctaaagct
cagaaagttgttcagccccaagaaaagaagatggatgtgaatgttttccagtacagatta
ctgaaaatgttccaagacatgtttggagaggagtgtgtccaccataaagacaagaactgt
ctcgctgtaagtgtagatgagaagactgtctacatcaacctggaaacccgagccgtttat
gaggaatccagttctgaagatgattctctcagagaaatggtggagctcgctgtgcaaagg
ctgtatgaagccatgaaccctgtcatgtga
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integrated database retrieval system
