Ctenopharyngodon idella (grass carp): 127502991
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Entry
127502991 CDS
T08802
Name
(RefSeq) serine and arginine rich splicing factor 5b
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03040
Spliceosome
cide05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127502991
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127502991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cide03041
]
127502991
Spliceosome [BR:
cide03041
]
Common components
Common spliceosomal components
SR proteins
127502991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
Nup35_RRM_2
RRM_occluded
RRM_5
SET_assoc
Macoilin
Motif
Other DBs
NCBI-GeneID:
127502991
NCBI-ProteinID:
XP_051732489
LinkDB
All DBs
Position
20:complement(19413861..19421398)
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AA seq
275 aa
AA seq
DB search
MSGCRIFIGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYDLDGK
ELCNERVTIEHARVRLRGGRGRGGAGGGSGGGGGRFPARYSRGSQDSRRNPPPMRTENRL
IVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASHSDLKNALEKLSGKEIN
GRKIKLVEASRKKSRTRSRSNSSSRSRSRGRSASRSRSRSRSHSPKSHNHSRSRSRSAST
SPVRPKEAARAESASPPTPAQRPPPSRSPSADSRH
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgagcggttgtcgtattttcatcggtcgattaaacccgtctgctcgggagaaggacgtc
gagcggttcttcaagggttatgggagaatcagagacattgacctgaaaagaggcttcgga
tttgtggaatttgatgatccaagagatgcagaagatgctgtttatgatcttgatgggaaa
gagctctgcaatgagagagtgaccattgaacatgcccgtgtccgcctgcgtgggggccga
ggtcgtggtggtgctggtggaggtagtgggggtggtggaggacgtttccctgctcggtat
agtcgtggctcccaggacagccggaggaaccctccaccgatgcgcacagagaatcgtctc
attgtggagaatttgtcgtcaagagtcagctggcaggatttaaaggatttcatgagacaa
gctggagaggttacttttgcagatgcccatcgaccaaagcttaatgagggtgtggttgag
tttgccagtcatagtgatctaaaaaatgccctggagaagttgtctgggaaagagatcaat
ggaaggaaaatcaaacttgttgaggcatccaggaaaaaatccagaactcggtctcgttcg
aatagctcatctcgttctcgttcacgagggcgttccgcatcccgttctcgtagccgctcc
cgttcccacagccccaaatcacataaccactcaagaagtcggtcccgttcagccagtact
tctcctgtgcggcccaaagaagcagcacgtgctgaatcagcatccccgccgaccccagcg
cagcgccccccgccgtctcgttccccgtctgcagacagccgtcattag
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