Ctenopharyngodon idella (grass carp): 127503253
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Entry
127503253 CDS
T08802
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127503253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127503253
03019 Messenger RNA biogenesis [BR:
cide03019
]
127503253
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127503253
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127503253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
127503253
NCBI-ProteinID:
XP_051732781
LinkDB
All DBs
Position
21:14209268..14219418
Genome browser
AA seq
1463 aa
AA seq
DB search
MSDEGAREDACREYQSSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPPG
EKLPVLYLVDSIVKNVGGDYLEVFAKNLVNSFICVFEKVDEATRKSLFKLRSTWDEIFPL
KKLYALDVRVNSIDPAWPIKPLPPNVNASIHVNPKFLKPTEETSPKPPAPPPPAPSLTQE
QMIRQQLLAKQKQLLELQQKKIELELEQTKAQLAASPAIGSNHHASAPARFDTSPKVSQT
APAPQTKPWLPAPSEKLSTRDPRLNRAVNAKEQVMHKKDSQVTPSFLNTSEKRGQVSAER
PSKLEKLRIPKKDNSNVEEKPKSKSMSPSGKGILVKPRGVESEHSKAAEMIKKDPRLHKQ
MHERTDLKDEDVREKKRGSEKKDRDEGVKNLDHQKSSSTRGKLINGSLNKHERLETFLKQ
EIKVNKANVRKRSRSRSRSPLLHSPKRKERRSPPKRKTRSITPPPKFGKARLSKHPHNDD
AFPQTSVRDERSTKKSAPESRRSKRPLEDRTADQKDGPQQRISPAEHKDTKDGKRWRSGW
EENKHPKQSDPDLSHGRVGTQRHKTWNTNQRPSTPRTPKQHRLSVDSNIQIPEALNSASK
RDLLRKASKRHAEGEISNDEFLNVAHQINQLFQYQEERQRSDSWDESCDEGVYPSKKKPQ
GLGTMSDAALSYLEHKSKLKRTQLLRPVQKEGHSPLHDMLLYQPNELTEQYIESSDVNKM
SGDAIKPVSDHEDPRRTDRPPSCTGSTFRNSPSPVSLDGTCGKTTVLPFERASSPVEMDQ
QPDGDISPRFESPNSVHSGTGPDDGPISVEGVPRHDHFLEQGGSGRNHDESPGNTPTHSS
EGPMPQLNVPRHDGPNIPQRFDRYKSSQAPFDVPPSHMREPRLDGPPIPYAPPPPRYEGS
TGVFDGSGGPVRYPGHRFDAPHRFERFPKGHERPVRFNNPSVSHRPMRCIEPHNMVRFDA
QAPIHYDHPMHQNRFVNPPRFDNPHMPHGPPGYEEPRFPARLMNFDEQQGAVRFDSPSGG
MRFENPVQPEPIRFDAPPVMPRYDPQGPPRFCGPNIPNQLRPQEPTMFDQTQGQAPVINP
AVPPPNFNMPPMNSFGGPAQQFPMQQNVSQASNFSVPVPTSSDFQGSFRPGPFPGPGVGS
VPQPMMGGQPFMPPNQISFQPGSQFPQPEPFRQIDVNDLFSKLVNTGIIKPAQTDSTTDS
TSASQTLSVPEEEEEEEQEEDDDVPDLTGFVLDDMKQRHDSIITKLYTGIQCYSCGMRFT
ASQTDVYADHLDWHYRQNRSEKDISKKVTHRRWYYTLTDWIEFEEIADLEERAKSQFFEK
VHEEVVQKTQEAAKEREFQSVKAAADVVHELCEICQEQFEMYWEEEEEEWHLKNAIRVDG
KTYHPSCYEDYKNTSSFVDCTPSPNKMLTENPLTAFMKQEQGDEEPCSSIKEEPSEDNTD
APMVKEEVQVKLEEESQTSAIIF
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaaggcgcgagggaggacgcctgccgcgagtatcagtcctcgctggaagat
ctgactttcaacagtaaaccgcacatcaacatgctcaccattctagccgaagaaaacatc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctcctggt
gagaagctcccagttttgtacttagtggattccatagtgaagaatgttggaggggattac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggat
gaggccactagaaaaagtctcttcaaattgcgttccacatgggatgaaattttccccttg
aagaagctgtatgcactagatgtgcgtgtgaattctatagatcccgcctggcctataaaa
ccactgccaccaaatgtgaatgccagcattcatgtcaaccccaaatttttaaaaccgact
gaggaaacatctccgaagcctcctgcaccaccacctccagctccgagcttgacacaagag
caaatgataagacaacagttgcttgcaaagcaaaagcagttgttagaacttcagcaaaag
aagatagagcttgaacttgaacaaacaaaagctcagttggctgccagtcctgctattggt
tcaaaccaccatgccagtgctccagcccgttttgatacctcaccaaaagtcagtcaaacg
gctcctgcaccacagaccaaaccttggcttccagcaccatcagaaaaattgtcaaccaga
gatcctagattaaacagagctgtaaatgcaaaggaacaagttatgcataagaaagatagt
caggttacaccaagctttctgaatacatcagaaaaaagaggacaagtctcagctgaaaga
ccgagtaaattggagaagttgaggattccaaaaaaggataactctaacgttgaggaaaaa
cctaaatccaagtccatgtcaccatctggaaaaggtatactggttaaacccagaggagtg
gagtctgaacattcaaaggctgctgaaatgattaagaaggacccaaggctacataagcag
atgcatgaaaggacagatttaaaagatgaggatgtcagagagaagaaaagaggttcagag
aagaaagatagggatgaaggtgtcaaaaacttggatcatcagaagtccagcagcaccagg
ggcaagcttataaatggctctctaaacaagcatgaaaggcttgagacatttctgaaacaa
gaaattaaagtgaacaaagcaaatgttagaaaaaggtctcggtcaagatcacgttcgcca
ctgttacattctcccaaaagaaaagaaaggcgatcacctccaaagagaaaaaccaggagt
attactccaccccccaagtttggaaaggctaggctaagtaaacatccacataatgatgat
gcttttccacagacgagtgtaagagatgaacgaagtactaagaaaagtgccccagaatcg
agacgatcaaaaaggccgcttgaggatagaactgctgatcagaaagatggaccacagcag
agaatttctcctgcagagcataaagacacaaaagatggcaagaggtggaggagtggatgg
gaagaaaataaacatcctaaacagtcagatccagatctttcacatggacgagtgggcacc
cagagacacaagacttggaacactaatcaaagaccatccacacctcgtacacctaagcaa
catcgcttgagtgttgatagcaacatacaaataccagaagcactcaattctgcaagtaaa
cgggatcttttaagaaaggctagcaaaaggcatgctgagggtgaaatatccaatgatgaa
ttcctcaatgtagcccatcaaattaaccaactctttcagtatcaagaggaaagacagcgg
tctgactcttgggatgaatcgtgtgatgagggagtgtatccatccaaaaagaaaccacaa
ggattgggaaccatgtctgatgctgcgctttcttatcttgagcataaatccaagttgaaa
agaacacaactcctccgcccagtgcaaaaagaggggcattcgcctttgcatgatatgttg
ctctatcaacctaatgaactgactgaacaatacattgaaagctcagatgtgaataaaatg
tctggtgatgccataaagccagtctctgaccatgaagatcctagaagaactgacaggcct
ccatcatgtacaggttccactttcagaaattcaccaagcccagtcagcttggatggaacc
tgtggaaaaaccacagtactgccttttgaacgggcgtcatctccagttgaaatggatcaa
cagcctgatggagacatcagcccacgttttgaaagtcccaacagcgtgcactctggtaca
ggcccagatgatggtccaataagtgtagagggtgttccaaggcacgatcatttcttggaa
cagggaggaagtggacgaaaccatgatgaatctcctgggaatacaccgactcactcttca
gaaggacctatgccacagttgaatgtgccacggcatgatggaccgaatattcctcaacga
tttgatagatacaagagttctcaagctccctttgatgtgccacctagccacatgagagag
ccaagattagacggtcctccaataccttatgctcctcctcctcctcgatatgaaggcagt
acaggtgtatttgatgggtctggtggacccgtaaggtatcccggacatcgctttgatgcc
cctcaccggtttgaaagatttcccaaaggccatgaaagacctgtgagatttaacaacccg
tcagtttcacacagaccaatgagatgcatagagcctcataacatggtgagatttgatgct
caagccccaattcattacgatcacccaatgcaccaaaacagatttgttaatccaccaagg
ttcgataatcctcacatgccacatggtccaccaggatacgaggaaccacggttcccggcc
agactaatgaattttgatgaacagcagggtgcagttagatttgatagtccgtcaggtggg
atgcgctttgagaacccagtgcagcctgaacccataagatttgatgcaccacctgtcatg
ccaagatatgaccctcaaggtcctccaagattctgcggtccaaatattccaaaccagctg
agacctcaagagccaacaatgttcgatcaaactcaaggtcaagctcctgtgataaaccct
gcggtgccaccacccaatttcaacatgccacccatgaactcgtttggtggcccagctcaa
cagtttcccatgcagcaaaatgtttcacaagcatccaacttcagtgtgccagtccctaca
tcatcagatttccaaggttcatttagacctggtccattccctggtccaggtgttgggagt
gttcctcagcctatgatgggaggtcaacccttcatgccaccaaaccaaatttctttccag
cctggttcccagtttccacagcctgagccatttaggcaaatagatgtgaacgatctgttt
tcaaaacttgtaaacactggaataataaaacctgcacaaacagactcaacaactgactcc
acatcagcaagccagactttatctgtgcctgaagaagaagaggaggaggaacaagaggaa
gatgatgatgtcccagatttgactggctttgttttggatgacatgaaacagagacatgac
agcattatcaccaaactatatactggaatccagtgctattcctgcggcatgcgttttaca
gcatctcagacagatgtgtatgcggatcatttggactggcactacagacagaatcgttcc
gagaaggacatcagtaagaaagttacacatcgccggtggtactacactctaacagactgg
attgaatttgaggaaatcgctgatctcgaggagagggcaaagagtcagttctttgaaaaa
gttcatgaagaggttgtacagaaaactcaggaggcagccaaagagagagagttccagagt
gtaaaagctgccgcagatgtcgttcatgagctatgtgagatttgccaggagcagtttgag
atgtactgggaggaggaagaggaagagtggcacctgaagaatgccatcagagttgatgga
aagacatatcatccctcatgttacgaagactacaaaaatacatcctcttttgtggactgc
acaccctcacccaataaaatgcttacagaaaaccctttaacagctttcatgaaacaagag
cagggtgatgaggagccatgctccagtattaaggaagagccctccgaggacaatacggat
gcaccaatggtaaaagaggaggttcaggttaagttagaagaagaatcacaaaccagtgca
attattttctaa
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integrated database retrieval system
