Ctenopharyngodon idella (grass carp): 127503320
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Entry
127503320 CDS
T08802
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127503320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cide03041
]
127503320
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127503320
Spliceosome [BR:
cide03041
]
Complex A
U2 snRNP components
U2 related factors
127503320
Complex B
127503320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
NifU_N
Motif
Other DBs
NCBI-GeneID:
127503320
NCBI-ProteinID:
XP_051732927
LinkDB
All DBs
Position
21:complement(30013916..30026656)
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AA seq
1037 aa
AA seq
DB search
MGRESRHYRKRSSSRARSGSRSKSRSPDSKRSKKDERAGSRTRERSRRERTRSRERRRSR
SRDRKRPRRSRSRDRRRASRERRRSKSRSRGRSKEKSENGEQSADKKKVKEEKEKEEEKA
EDQDFDQNTLEEEMRKRKERVEKWREEQRKKAMENIGEIKKELEEMKQGKKWSLEDDDDD
DEETQAPAEPDEDEQEKDTAAETEEAALMEEETGEELDPLDAYMEEVKEEVKKFNMGTMK
GGNDKHKGGMSVTKVVTVVKTKKMLHSSKKKGELMENDQDAMEYSSEEEVVDLQTALTGF
QTKQRKVLEPVDHQKIEYESFRKNFYVEVPELARMTPEEVNEYRLELEGIIVKGKGCPKP
IKTWVQCGISMKVLNAMKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM
FRHILDQRPLGEGEGPIAVIMTPTRELALQITKECKKFSKSLGLRVVCVYGGTGISEQIA
ELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRATYVVMDEADRMFDMGFEPQVMRIVDNV
RPDRQTVMFSATFPRTMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLL
EILGHYQEKGSVIIFVDKQEHADSLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGAC
RLLVATSVAARGLDVKHLILVVNYNCPNHYEDYVHRAGRTGRAGNKGFAYTFITADQVRY
SGDIIKALELSGSPVPPELEQLWTGFKEQQKAEGKSIRSSSGFSGKGFKFDETEHALANE
RKKLQKAALGLHDSDDDDAALDIDEQIESMFNSKKRVKDFSAPGGAAGGASGGMSGAVTA
VSGLSTPSAGNIQKLEIAKKLAARIQVQKNLGAEAQDVMQQATNAILRGGTMIAPSVSAK
TIAEQQAEKINAKLNYTPVEKLEEDRQAAEAAETVKRYEEELEINDFPQTARWKVTSKEA
LQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELI
RLQNSYQPTSKGRYKVL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgggacgagagtcacggcactacaggaagcgctccagctcgagggcgaggtcaggcagc
aggtctaagagccggtcgccggactccaaacgctccaagaaagatgagcgggccggatca
cgcacccgggagcgcagccggagggaacggacgcgcagcagagagcgccggagatcccgc
tccagagaccgcaagagacccagacgctccagaagtcgggacaggagacgtgcgagccga
gagcgccggaggagcaagagcaggagcagagggaggagcaaggagaagtcggagaacgga
gagcagtctgctgacaagaagaaggtgaaggaggagaaggagaaggaggaggagaaggct
gaagaccaagactttgaccagaacaccctggaggaggagatgaggaagaggaaagagcga
gtggagaagtggagggaggagcagaggaagaaagccatggagaacatcggcgagatcaag
aaagagctggaggagatgaagcaggggaagaagtggagtctggaggatgatgacgatgat
gatgaagagactcaagcgcctgcggagccggacgaggacgagcaggagaaagacacagcg
gctgagacggaggaggctgcgctcatggaggaggagaccggagaggagctcgaccctctg
gacgcctacatggaggaggtcaaagaggaggtcaagaagttcaacatgggcaccatgaaa
ggaggaaacgacaagcataaaggaggcatgtctgtgaccaaagtggtgacggtcgtgaaa
accaagaagatgctgcactcctccaagaagaaaggagagctgatggagaacgatcaggac
gccatggagtattcatcagaggaagaggtcgtggacctgcagacggccctcacaggcttt
cagaccaaacagaggaaagttctggagcctgtggatcatcagaagatcgaatatgaatcc
ttccgcaagaacttctacgtggaggtgccggagctggctcggatgacccctgaagaggtg
aatgaataccgtctagagctggaggggatcatcgtcaaaggcaaaggatgtccgaagccc
atcaagacatgggtgcagtgtgggatatccatgaaagtgctgaacgcaatgaagaaacac
aactatgagaagccgaccccgatccaagcccaggccattccggccatcatgtcgggacgc
gatctcattggcatcgctaaaacaggaagcggaaagaccattgccttcctgctgccgatg
ttccggcacatattagaccagcggccgctaggagagggggaaggacccatcgccgtgatc
atgacccccacgcgagagctggctctgcagatcaccaaagagtgcaagaagttctccaag
tctctgggtctgcgtgtggtgtgtgtgtacggaggcacgggcatcagcgaacagatcgcg
gagctgaagcgaggtgcagaaatcatagtgtgcactcctggacggatgatcgacatgttg
ggcgccaacagcggtcgagtgaccaatctgcgcagagctacgtatgtggtgatggacgaa
gctgaccgaatgttcgatatgggctttgaaccgcaggtgatgcgtatcgtggataacgtc
aggcccgaccggcagaccgtcatgttttccgccacatttccacggacgatggaggccttg
gcccgcaggatcctgtccaagcccatcgaggtgcaggtgggcggcaggagtgtggtgtgt
tcagacgtggagcagcacgtgattgtgatcgaggaggagaagaagttcctgaagctgctg
gagattctgggtcactatcaggagaagggatccgtcatcatcttcgtggacaagcaggag
cacgccgacagcctcctgaaggacctgatgaaggcctcgtacccctgcatgtcgctgcac
ggaggcattgaccagtacgacagggacagcatcatcaacgacttcaagaacggagcctgt
cggctgctggtggccacctccgtcgccgcacgaggcctggacgtcaagcacctcatcctg
gtggtcaactacaactgccccaaccactatgaggactacgtgcaccgcgccggacgcacg
ggacgagccggcaacaagggtttcgcgtacacgttcatcactgcagaccaggtgcgatac
tccggcgacatcatcaaagccctggagctgtccggatcgcccgttccccccgagctcgag
cagctctggaccggcttcaaagagcaacagaaagctgagggcaagagcatcaggagcagc
agcggattctccgggaagggcttcaagttcgacgagaccgaacatgcgctcgccaacgag
aggaagaagctgcagaaagctgcgttgggtctgcatgactctgacgatgatgacgcggct
ctggacatcgacgagcagatcgagagcatgttcaactctaagaagcgtgtgaaggacttc
tcggccccgggcggcgctgcgggaggagcttctggcggcatgagcggagccgtgaccgcc
gtctccggcctgagcactccctctgctggaaacatccagaaactggagatcgccaagaaa
ctggcggccaggatacaggtgcagaagaatctgggtgccgaggcacaggatgtgatgcag
caggcgacaaatgccattttgcgcggcgggacaatgatcgcgccctcagtctcggccaag
accattgcggagcagcaggcggagaagatcaatgctaaactcaactacacgcctgtggag
aagctggaggaggaccgacaggccgcagaggccgccgaaaccgtcaagagatacgaggag
gagttagagatcaacgacttccctcagacggccagatggaaggtgacgtcgaaagaggct
cttcagcgcatcggcgagtattcagaggccgccatcaccatacgaggaacctacttcccc
ccgggcaaagagcccaaagagggcgagcgcaagatctacctggccatcgagagtgcgaac
gaactggccgtgcagaaggccaaagcagagatcacacgcctcatcaaagaggaactcatc
cgcttgcaaaactcgtaccagccgaccagcaaaggccggtacaaggttctgtag
DBGET
integrated database retrieval system
