Ctenopharyngodon idella (grass carp): 127503414
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Entry
127503414 CDS
T08802
Name
(RefSeq) BRCA1-A complex subunit RAP80 isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127503414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cide03400
]
127503414
DNA repair and recombination proteins [BR:
cide03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
127503414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAP80_UIM
UIM_2
Motif
Other DBs
NCBI-GeneID:
127503414
NCBI-ProteinID:
XP_051733104
LinkDB
All DBs
Position
21:22616225..22631060
Genome browser
AA seq
926 aa
AA seq
DB search
MPRRKRTPDESGRRAKVSKVDHNEETLVISDSEQEEEDSPIKRSSRTARWRRRENKSQLQ
ELTEDEMLDLALKLSAQEANSVAQRRRLEDKDIQKAIAESLNESTVKASEGQDEAASSSD
QPQQNVANAISHLRRKLSYPSQDQTNRKNERETTSPLPEMPDLSPMASSHLSSKSSAQVS
RTPATTQDKTSDKQTVISDTPEDELFKSLSESQTSPVFSRHGSFDRQPVVCVEKLSQELI
PASAGSINFHTQDSTVISTCPDRFRSPQQDSPFSKWPVFTQGDFKRSSNLLEDKDDHQNA
KGNEDDTQIPAEDTHLPTQLSQGLSTDPDTCLSPSKRSQISSPKCVPVKNNEDVTETSKT
PDQKQVEDQTPQGENVKSDTAAESAPNTQSWNEFTSHMVLHLTDDDDDDEDDGSEEVLSP
SPVKKIFRPIRTELSPNQSCISSTTITLDPSTQDTQMSRSVLEEDSRASKATESKPTDCK
PQHTSVEKGQCTISYYWGVPFCPVGQNPDEYTRVIMCQMEVYEKSLKEAQRELLRKADWG
QPVCPRSSERQFGGRRWKRHRAPQLSEDEEENEEEGEKENNRIEVEEERDKAGQESVVGS
QEEAEGGQTETYVVLSSPETKDEQVEKTPFSSQEEPATAAANKSFRKNAPWDISDETQIK
CPAEQEEQEAQTHEGCEEDDIVCPETQMTENSTPELMMTSPASPAQPQSHADSEVMEVEE
GGGASVAVEEMMEQECDPTEAAPPHSQRMECPMCSKLFPLSRIEVHAAFCDGEADQQEEQ
SQVVARRRRTRGNLTEESQQSGKSAEMEKCFLCQELFSPQEYPDHVKLCFKKKDSKTNEE
NGLLSALERTERRHTGSDEPGPSDVSTKSNCGLANPAVIGMSESVDCSATTSCPSNAFTP
RSENTDCLIDSSKNSLRLSRKRKFKR
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgccacgccggaagcgcacaccggatgaaagcggaagaagagcgaaagtcagcaaagtg
gatcacaatgaggagaccctggtcatttctgattctgaacaagaggaggaagattctccc
attaaacggtcctctcggacagcccggtggagacgaagggagaacaagtcgcagctacaa
gagctgacagaagatgagatgctggacctggccctaaaactgagcgctcaggaagcaaac
agtgttgcacagagacgacggctggaagacaaagacatacagaaagccatagcggaaagt
cttaatgagagcactgttaaagcatcagagggtcaggatgaagcagccagctcttcagat
caaccacagcagaatgtagcaaatgcgatatcacacttgagacgaaagctgtcttacccc
agccaggatcagacaaaccgcaagaatgagagggaaacgactagtccgctgccagaaatg
cctgatctgtcaccgatggcctcctcacatctttcatcaaagagttcagctcaggtctcc
aggactcctgctaccactcaggacaagacctcagataaacagacagtcatcagtgacact
ccggaggacgagctcttcaaatctctctcagagtcccagacatcccctgtcttctccagg
catggcagcttcgatcgccagcctgtagtatgtgtggagaaactgagtcaggaactcatc
ccggcgagcgcaggctcaataaactttcacacacaggacagcactgtcatttccacttgc
cctgacagatttcggtccccccagcaggattcgcccttttccaaatggccggtcttcact
cagggtgacttcaaacgatcaagcaatttgctagaggacaaagatgaccatcaaaatgct
aaagggaatgaagacgatactcaaatacctgctgaagatactcatttaccaacacagcta
agccaaggtttgagcacagatccagatacgtgcctttcaccttctaaaagatcccagata
tcaagccccaaatgtgtgcctgtaaaaaacaatgaagacgtcactgaaacaagtaaaact
cctgaccaaaagcaagtggaggatcaaacccctcagggtgagaatgtaaaatctgacact
gctgcagaaagtgctccaaacactcagtcttggaatgaatttactagtcacatggtcttg
catttaacagatgatgatgatgatgatgaagatgatggcagtgaagaggttctttccccg
agcccagtcaagaagatttttcggccaatcaggactgagctttctccaaaccagtcctgt
atctcttcaactaccatcaccctcgatccttccacacaagacacacagatgtctcggtct
gtcctggaggaggactcaagagcatccaaagctactgaatccaaacccaccgactgtaaa
cctcaacatacttcagtggaaaaaggacaatgcacaatctcttactactggggagtgcct
ttctgtcctgtggggcaaaacccggacgagtacacccgtgtgatcatgtgtcagatggag
gtgtacgagaagagcctgaaggaggcccagcgagagctgctgcgcaaagcagattgggga
cagccggtgtgtcctcgctcatcagagaggcagtttggtgggaggagatggaagcgccac
agagctcctcagctgtcggaagatgaggaggagaatgaagaagagggagagaaggaaaat
aacagaatagaggtagaagaagagagggacaaagcagggcaggagtctgtggtggggtca
caggaggaagctgagggaggacagactgagacatatgtagttttgtcttctccagagaca
aaagatgagcaagtggaaaaaacaccgttctctagccaagaagagcctgcaactgcagct
gcaaataaatctttcaggaaaaatgctccatgggatatttcagatgaaactcaaataaag
tgtccagctgagcaggaggaacaggaggcccagactcatgagggttgtgaagaggatgat
atagtttgtccagagactcagatgactgaaaacagcacaccagagctaatgatgaccagt
cctgccagtcccgcacagccccagtctcacgctgacagcgaggtgatggaggtagaggag
ggaggaggtgcgtctgtggcagtggaggagatgatggagcaggagtgcgatccaacagaa
gcagctcctcctcacagtcagaggatggagtgccccatgtgctctaaactcttccccctc
agcaggatcgaggtgcacgcagctttctgtgatggtgaagcagaccagcaggaagaacaa
tcacaagttgttgcccgacggaggaggaccagaggaaatttaacagaggaatctcagcaa
tctggcaagtcagcagagatggagaagtgcttcctgtgtcaggagttgttttcaccccag
gagtatccagatcatgtcaagttgtgcttcaaaaagaaagactcaaaaactaatgaggaa
aacggcctactttctgctctggaacggacagaacgaagacatactggcagtgatgaacct
gggccatctgatgtttcaacaaagagcaactgtggtcttgccaatcctgcagtgattggg
atgtctgaaagtgtagactgttcagcgacgacttcctgtcccagtaacgccttcactcct
cgatcagaaaacactgactgccttattgactcctctaagaacagcctaagactctcaaga
aaaagaaaattcaaaagatag
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