Ctenopharyngodon idella (grass carp): 127503524
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Entry
127503524 CDS
T08802
Name
(RefSeq) DNA repair protein RAD50-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03440
Homologous recombination
cide03450
Non-homologous end-joining
cide04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127503524
03450 Non-homologous end-joining
127503524
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
127503524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cide03032
]
127503524
03400 DNA repair and recombination proteins [BR:
cide03400
]
127503524
DNA replication proteins [BR:
cide03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
127503524
DNA repair and recombination proteins [BR:
cide03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
127503524
BRCA1-C complex
127503524
NHEJ (non-homologous end-joining)
MRX complex
127503524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
Intein_splicing
ATG17_like
ABC_tran
AAA_29
DUF6284
AAA_13
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
127503524
NCBI-ProteinID:
XP_051733421
LinkDB
All DBs
Position
21:30229809..30271008
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQVISFFSPLTVLVGPNGAGKTTIIECLKYITSGDFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFRDVNGDAVAVQRSMQSTQKGKKTEFKTLEGVITR
IKHGEKVSLSSKCAEIDREMIASLGVSKAVINHVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKVLETLRTLRLKQANTVKTCQMELKYLKQNKEKAQEIRELLTTKEAQLSSSKEN
VQRIENQIDPLENRLYDIDSSLSKVMKLDNDIKALESRKKQMEDDNQELEEKMEQVFQGS
DDQLQDMYQNHQRTVKEKERRLTECQRELERAGQECQRMNRNKSYLLVEQGRLQLEADRH
TENIKKRDTQVKSLASSLELEGYDRTPLNERQLQSFHRQVKERLDQDSKDLNQTMHDMQE
KEAQKQQSIDDLRDKKTGLERTIELKRDIQAKKQQELKNIKSDLQKLEGSSSRLQELDTE
LQKMERELDNAVQACTVDCLKAEVIELQREKTELDQAQRRLDKEMELLNTHTRAHAEMDM
LKKNKMDKEEQVRKIKSRHNEELVSLLGHFPSKRELEDWIHSKSREINSTRERLSKMNKE
LASGEQNKTHFAAEIKRKEELLASYEERLFNVCGSQDFQSDLSKLDDELEKCSKQRAMLA
GATAVYSQFISQLTEEGEPCCPVCQRVFPSEAELQDVINDMQSKLRLVPDKLKNTEQDLK
RKERRRDEMMALKPIRQSIVELQEKELPELRNKLQRVNREIEKLKGDTEEQETLLCTLMS
EEDTAKACLQDVSLMDRYQLDLKDVERKIAQHAARLQGVDLSRTMQQVSQEKQETQLRLD
TTCSKIELKRKLIQDQQEQIQALRSSVNEIRGEKLQISSNMQKRQQLEEQCVEFSTEIQT
LHRDIRDAKEQMSPLAATLEKLQLEKQDLAKRRMQKQAEGQEKINAIKEKVKNLTQLEKE
ITKYIEEDKDTYKEQKETELQEVEKQLHEAEKHREKTNKDMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVSRKHEALLKEMGNMQVMQLRNERREVERKLEDLKKNRSVALGRQKG
YEDEILRFRKELSEDQYCRAEDLYRDKMIVMRTTELANKDLDIYYKALDQTIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDVDENASAGLKRRTYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLVITHDEDFVELLGRSNYVEHFYRIRKNQDQCSEITKCSINTLNSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagattgaaaagatgagtattctgggagtgaggagttttggagttgaggataaa
gacaaacaagtgatctccttcttcagccctctgacggtgcttgtgggacctaatggagct
ggaaaaacgaccatcatcgagtgtctcaaatacatcacttcaggagactttccaccagga
agtaaagggaacacctttgtccacgatcccaaagatgctcatgagacggatgtacgggcg
cagatcagactccagtttagagacgtgaatggcgatgctgtggccgttcagaggtctatg
caaagtacacagaagggcaagaaaacggagtttaaaactcttgagggtgtcattaccaga
atcaagcatggagagaaagtgagtctgagctctaaatgtgctgaaatagaccgtgagatg
atcgcatccctgggcgtttccaaagctgttatcaaccatgtcatcttctgccaccaagag
gagtccaactggcctctcagtgaagggaaagccctcaaacagaagtttgatgagatcttc
tcagccacaaggtacattaaggttttggagactctgcgaacgttgaggctgaagcaggcc
aatacggttaaaacctgccagatggagctcaagtacctaaaacagaacaaagaaaaggcc
caagagattagagagctgctgaccactaaagaggctcagctgtcttcctccaaagagaat
gtccaacgcatcgagaatcagattgacccactggagaaccgattgtatgacattgacagc
agcctcagcaaagtaatgaagttggataatgacatcaaagctctggaaagcaggaagaaa
cagatggaggatgataaccaggaactagaggaaaagatggagcaggtgtttcagggctca
gatgatcagctgcaggatatgtatcagaaccaccagcggactgttaaagagaaggaaaga
agacttacggagtgtcagcgcgagcttgaacgggctggccaagagtgccagaggatgaac
cgcaacaaatcttacctgctagttgagcaaggccgtctgcagttggaggcagataggcac
acagagaacattaaaaagagggacacccaggtgaaaagtttagcgtcttccctggagttg
gagggctatgatcggacacctcttaacgaacgtcagctccagagcttccacagacaagtc
aaagagagactggaccaggactctaaagacctcaaccaaactatgcatgatatgcaggag
aaagaggcacagaagcagcaaagcatcgatgatctccgtgataagaagaccggtctagag
agaaccattgagctgaaaagagacatacaggccaaaaaacaacaggaactgaagaacatc
aagtctgatctccaaaaactggagggctcctctagcagactgcaggagctggacactgag
cttcagaaaatggagcgggagcttgataatgctgtgcaggcctgtactgtggactgtctg
aaggcagaagtaattgaactacagagggagaaaactgaactggatcaggcccagcgcaga
ttggataaggagatggaactgctcaacacacacaccagggcacatgcagagatggacatg
ctcaagaagaacaagatggataaagaggagcaagtgaggaagatcaagtcaagacataat
gaagagctggtgtctctgctgggacacttcccaagcaagagagagctggaagactggatc
cactccaaatccagagagatcaactccaccagagaacgactcagcaaaatgaacaaggag
cttgcgtctggagaacagaataagactcacttcgcggcagaaatcaaacgtaaggaagag
ctgctggccagttatgaagagagactttttaacgtgtgcggcagtcaggacttccagtcg
gacctgagcaaactagatgatgagctggagaagtgttctaaacagagagccatgctggcg
ggtgccacagccgtgtacagtcagttcatcagtcagctgacggaggagggcgagccctgc
tgtcccgtatgtcagcgcgtgttcccgtcagaggcagagctccaggatgtcattaatgac
atgcagtccaagctgcggctcgtcccagacaaactgaagaacactgagcaggacttgaag
agaaaagagcgcagacgtgatgaaatgatggctctgaagcccatcaggcagtccatagtg
gagctccaggagaaagagctgccagagctcagaaataaactccagcgtgtaaatcgagaa
atcgagaagctgaaaggagacactgaggagcaggagacactgctgtgcacactgatgtct
gaggaagacacagccaaggcctgtctgcaggatgtctccctcatggatcgctatcagctt
gacctgaaggatgtagagagaaagattgctcagcatgcagccaggctgcagggagttgac
ctcagccgcaccatgcagcaggtcagccaggagaaacaagagacccaactccgcctggac
accacctgcagtaagatcgagctgaaaaggaaactgatccaggaccagcaggagcagatc
caggccttgaggagcagtgtaaacgagattcgtggagaaaagctccagatctctagcaac
atgcagaaacgtcaacagttggaggagcagtgtgtggagttctccactgaaatccaaacg
ctccaccgagacattcgagatgcaaaggagcagatgtctcctctagctgcaactctggag
aagctccagctagagaaacaggaccttgccaagcgcaggatgcaaaaacaggcagaaggg
caagaaaagataaatgcaatcaaggaaaaagtaaaaaacttgacccaacttgaaaaagag
atcaccaagtacattgaagaggacaaagacacctacaaagagcaaaaagaaactgagcta
caagaggtggaaaaacaactacacgaggctgaaaaacacagagagaagaccaataaagac
atgggcaacatccgacaagatattgacactcagaaggttcaagagcgctggctacaggat
aacttgaccttacggaagcgtgtggaagagctgaaagaggtgtctagaaaacatgaagcc
ttgcttaaggagatgggcaacatgcaagtcatgcagctgcggaatgagcggcgagaagtc
gagcgaaagttggaggacctgaaaaagaaccgcagtgtggctctcggtcgacagaaaggc
tacgaggacgagatcctccgttttcgtaaagagctcagtgaggatcagtattgccgggcc
gaggatctctacagagacaaaatgattgtcatgagaacaacagagttggccaataaggac
ctggacatctactataaagctctagaccaaacaataatgaagtttcacagcatgaagatg
gaggagattaataaaatcatcagagatttatggcggagcacatacaggggacaagacatt
gagtacgtagagattcgctctgatgtggatgagaacgcctctgccggcttgaaaagaagg
acttataactatagagtggtaatggttaaaggagacacggctttggacatgcggggacgt
tgcagtgctggacaaaaggttctcgcctccctaataatacggttggctctggctgagacg
ttctgtctgaactgtgggattctggcgctggatgagcccaccaccaatttagacagagag
aatatagagtccttggcacacgcactggtggagataatcaagagtcgttctcgtcaacgc
aacttccagctgcttgttatcacccatgacgaggattttgtcgagctcctgggacgatcc
aactatgtggagcatttctacaggatcaggaagaaccaggaccagtgctcagagatcacg
aagtgcagtatcaacacactcaactcctacctgcactga
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integrated database retrieval system
