Ctenopharyngodon idella (grass carp): 127503829
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Entry
127503829 CDS
T08802
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127503829
03036 Chromosome and associated proteins [BR:
cide03036
]
127503829
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
127503829
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
127503829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
Spt6_S1
S1
HHH_3
HHH_9
S1_RRP5
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
127503829
NCBI-ProteinID:
XP_051733936
LinkDB
All DBs
Position
21:16092644..16107938
Genome browser
AA seq
1723 aa
AA seq
DB search
MSDFIESEAEESEEEFEEKDLKPKKTQRFMEEDEEEEEEENTEDQDEHGNLRGLIDDGDV
EEEEPVEAQSGGEDSDSGEEVRHRRRKRSYDDYLDDDDLDLIEENLGVKVKRRKKKYSRV
KTMDDEGEDDEKDMIADEIFTGDGDGDGEVEDGEAVDTLHPRDDEEEEEDEESDIDDFIV
DDDGQPITKKKGKKFSGYTDAALQEAQEIFGGDFDFAEFDTEAYDHAEEEEEDQDDESWD
RPKKQTKRRVGRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRAIPVKPAEDDEL
EEEAEWIYRNAFSTPTISMQESTDYLDRGTTTNFSRKGPTTIAKIKEALNFMRNQHFEVP
FIAFYRKEYVEPELNINDLWKVWQWDEKWTQLKTRKQNLTRLFQRMQSYQFEQISADPDK
PLADSTRPLDTADMERLKDVQSLDELGDVYNHFLLYYGRDIPKMQNATKASKKKLKKIKE
VSEEDGEEAEVEEEEEEEEQKGPDLKQASRRDMYSICQSAGLDGLAKKFGLTPEQFGENL
RDSYQRHETEQFPAEPLELAKDYVCSQFNTPETVLEGARYMVAMQIAREPLVRHVLRQTF
QERAKINIKPTKKGKKDVDEAHYAYSFKYLKNKPVKELSGDQFLKMCLAEEEGLLAIDIC
IDLVGVKGYGDQTYFDEIKQFYYRDEFSHQVQEWNKQRTLAIERSLQQFLYPQMAKELKN
KLIAEAKDNIVKSCCKKLYNCLKVAPYRPDQQVEEDDDLMDESQGKGIRVLGVAFASGRD
TPVFCSLINGEGEVVDFLRLPYFLKRRNAWREDEREKKLQDIENLKKFLLSKKPHVVAVA
GENRDAHMVMEDIKRTISELEQDSSLPAVGVELVDNELAVLYMNSKKSEADFRDYPPLLR
QAVSVARKIQDPLVEFAQVCSSDDDILCLKLHPLQEHVVKEELLGALYCEFINRVNEVGV
DVNRAIAHPYTQSLVQYICGLGPRKGSHLLKILKQNNTRLENRTQLVTMCHMGPKVFINC
AGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEE
ILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRAPYRPPNTEEVFN
MLTKETPETFYIGKLITCVVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSE
VWNHFDSGSCPGQAIGVRTRLDNAVMGFIPTKFLSDKVVKHPEERVKVGMTVHCRIMKID
IEKFNVDLTCRTSDLSDKNNEWKLPKDTYYDFDAETDDVKQEEEHKKKQQRTTYIKRVIA
HPSFHNINFKQAEKMMESMDQGDVVIRPSSKGENHLTVTWKVADGIYQHVDVREEGKENA
FSLGHTLWINNEEFEDLDEITARYVQPMAAFARDLLGHKYFHECNGGDRKKMEELLIRSK
KEKPTFIPYFVSACRDLPGKFLLGYQPRGKPRIEFVTITPDGFRYRSQIFPTVNGLFRWF
KDHYQDPVPGVTPTSSRTRTPASVNATPANINIADLTRAVNALPRNMTSQMFNAIAAVTG
QGQNPNTTPAQWASSQYGYSGGSSAGGGGSSSAYHVFATPQQPMATPMMTPSYSYTTPGQ
QQAMTTPQYPSSTPQSSHGHHQHSSSTPSSSSSRVRTPQPKTSSHTAVDWGKMAEQWLQE
KEAERRKQKTPRMTPRPSPSPMIESTPMSIAGDATPLLDEMDR
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacttcatcgagagcgaggctgaggagtcagaggaggagttcgaggagaaggac
ctgaagcccaagaagacgcagagatttatggaagaggatgaagaggaagaggaagaagag
aatactgaagatcaggatgagcatggaaacctgagaggactcatcgatgatggtgacgtg
gaagaggaagaaccggtagaagcgcaaagtgggggagaagacagtgactctggtgaagag
gtccgtcatcgccgcaggaaacgaagttatgatgactatctggatgatgatgatctggac
ctcattgaggagaatttaggagtgaaagtgaagaggaggaaaaagaagtactctcgtgta
aaaaccatggatgatgagggggaagatgatgagaaagacatgattgctgatgagatcttc
actggggatggagacggagatggagaagttgaggacggagaggctgtggacacacttcac
ccaagagatgatgaagaggaggaggaagatgaggaatctgacattgatgatttcattgtg
gatgatgatggacagcccatcactaaaaagaagggaaagaaattctctggctacactgat
gctgctttgcaagaagctcaagagattttcgggggtgattttgactttgctgagttcgac
actgaggcgtatgatcacgcggaagaggaagaggaggatcaggatgatgagtcatgggat
cgaccgaagaagcagaccaagagaagagttggccgtcgtagcatctttgagatctatgag
cccagtgagctggagagcagccacatgaccgatcaggacaatgagatccgctctacagac
atgccagaaagattccagttgagggccatccctgtaaagcctgctgaggatgatgagctg
gaggaagaagctgaatggatttacaggaatgccttctctacaccaaccatctccatgcag
gagagcacagactacctggatcgtgggactaccactaatttcagcagaaagggccccact
actattgctaaaatcaaagaagccctgaactttatgaggaatcaacactttgaggttccc
ttcattgcattctacaggaaggagtatgtggaaccagagctgaacattaatgatctgtgg
aaagtgtggcagtgggatgagaagtggacccagttgaagaccagaaagcagaacctgaca
cgtcttttccagcgaatgcagtcttatcaatttgagcagatttcagctgaccctgacaag
ccgctggccgactcgactcgtcccctagacactgctgatatggagagactgaaagatgtc
cagtctcttgatgagctgggagacgtctacaaccacttcctgctctactatggccgagac
attcctaagatgcaaaatgcaaccaaggccagcaaaaagaaactgaagaagatcaaggaa
gtgtcagaggaagatggggaagaagcagaagtggaggaggaagaggaagaagaggagcag
aaggggccagatctgaaacaagcctcccgcagagatatgtacagcatctgccagagcgca
ggccttgatggtcttgccaagaagtttggactgaccccagagcagtttggagaaaacttg
agagacagttatcagagacacgaaaccgagcagttccctgcagagcctttggagctggcc
aaggattatgtgtgcagccaatttaacacccctgagactgttctggaaggtgctcgctac
atggtagcgatgcagattgcccgtgaacctctggtcaggcacgtgctcagacagaccttc
caggagagggccaagattaacatcaagccaactaagaagggaaagaaggatgtggatgag
gcacactatgcttattccttcaagtacctgaagaacaagcctgtgaaagagctcagtgga
gatcagttcttgaagatgtgcctggctgaggaggaaggcctgctcgccatagacatctgt
attgaccttgtgggagtcaaagggtatggcgatcagacatactttgatgagattaagcag
ttctactacagggatgagttcagtcaccaggtgcaggaatggaacaagcagagaaccctt
gccattgaacgttcccttcagcagttcctgtatccacagatggccaaggaactgaagaat
aagcttatcgctgaagccaaggacaatattgttaagtcttgctgcaagaagctgtataac
tgcctgaaggtagctccttatcggcctgatcagcaggtagaggaggatgatgaccttatg
gatgagtcacaaggaaagggtatccgtgtactcggggtggcctttgcttctggcagagac
acaccagttttctgttccctcatcaatggtgaaggagaggttgtggacttcctccggcta
ccttatttcctgaagaggagaaatgcatggagagaggatgaaagagagaaaaagcttcaa
gacattgaaaatctcaagaaattcctccttagtaagaagccacatgttgttgcagttgct
ggggagaatcgtgatgctcatatggtgatggaggacatcaagcgcaccatcagtgagctg
gagcaggactcctctcttcctgcggtgggagtggagctggtggacaatgagttggctgtg
ctttatatgaacagcaagaagtctgaggcggacttcagagattacccacctctgcttcgg
caggctgtgtctgtggcacgcaagattcaggaccccctagtggagtttgcccaagtctgc
agctccgatgatgacattctgtgtttgaaactgcatcccctgcaggagcatgtagtgaaa
gaggagctgctgggcgctctctactgtgagttcataaaccgggtgaatgaggttggtgtg
gatgtgaaccgagccattgctcacccttacacccagagcctggtccagtacatctgtggc
ctcggacctagaaaaggctcccacctgctcaagattcttaaacagaacaacactaggtta
gagaaccggacacagttggtcaccatgtgccatatgggacccaaagtctttattaactgt
gctggctttatcaagatcgacaccgcctctcttggagacagcactgactcctacattgag
gttcttgacggttcccgagtgcatcctgaaacgtatgagtgggcgcgtaaaatggcggtg
gatgctctagagtatgatgagtcggcagaagatgccaacccagccggagcactagaggag
atccttgagaacccagaaagactgaaagacctggatctggatgcctttgctgaggagctg
gagagacagggttatggcaataagggaattacactgtatgacatccgagcggagctcagc
tgtagatataaagatttgagagccccttacaggcctcccaacactgaggaggtctttaac
atgctcaccaaggagacgcctgagaccttctatattggtaaactcatcacctgtgtggtg
actggcatcgctcacagaaggccacagggcgagagttatgaccaggccattcgtaatgat
gagacgggactctggcagtgtccattttgccagcaagacaacttccctgaactcagtgag
gtgtggaatcactttgacagcggctcctgtcctggtcaagccatcggtgtgagaaccagg
ttagataatgctgtcatgggctttatcccaaccaagtttcttagtgacaaggtggtcaag
caccctgaggagagggtcaaggttggcatgaccgtgcactgccgcatcatgaagattgac
atcgagaagttcaatgtggacctcacttgtagaacatctgatctgagtgacaagaacaat
gaatggaagcttcccaaagacacctactatgactttgatgctgagacagatgatgttaaa
caggaagaggagcataagaagaaacagcagagaaccacttacattaagcgtgtgatcgct
cacccatccttccacaatatcaacttcaaacaagcggaaaagatgatggaatccatggac
cagggtgacgtagttattcgacccagcagtaaaggggagaaccacctgacggtcacgtgg
aaggtggctgatgggatctatcagcatgtggatgtgcgtgaggagggcaaagagaatgcc
ttcagccttggacatactctctggatcaacaatgaggaatttgaggatctggatgaaatc
acagccagatatgtccagcccatggctgcgtttgcacgagatctgcttggccacaagtac
ttccacgagtgcaatgggggtgataggaagaaaatggaggaactcctcataaggtccaag
aaagagaagccgacattcatcccctactttgtttcagcttgtagagacctaccgggcaaa
tttctcctgggttaccagcctagagggaagccgagaatagaatttgtaaccatcactcca
gatggctttaggtaccgttctcagatattccctacagtcaatggtctcttccgctggttc
aaggaccactaccaggatcctgtgccaggtgtcacaccaaccagcagcagaacgcgaaca
ccagcatcagtcaacgccacacctgccaacattaacattgcggacttgactcgagctgtc
aacgctctcccgcgaaacatgacgtcccagatgttcaacgccatagcggcggttacaggg
cagggccagaatcccaacacaacgccggcccaatgggcctccagtcagtatggttacagt
ggtggcagcagtgcaggaggtggtggcagcagcagcgcttatcacgtattcgcaacgccc
cagcagccaatggccacacctatgatgacgcccagctattcttacaccacacctggccag
cagcaggccatgaccacgccccagtatcccagcagcacaccgcagtcctcacacggacac
catcagcattcgtcctctacgccatcgtcctcgtcatcgagagtgcggacgccacagccc
aagacaagttcccacactgccgtggattggggtaagatggctgaacaatggctgcaggag
aaagaagccgagcggcggaagcaaaagacgccccgcatgacgccccgaccttcacccagc
cccatgatcgaaagcacgcccatgtctatcgccggagacgccactcctctcttggacgag
atggaccgatag
DBGET
integrated database retrieval system
