Ctenopharyngodon idella (grass carp): 127504204
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Entry
127504204 CDS
T08802
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127504204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127504204
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
127504204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
LPP
XhlA
Motif
Other DBs
NCBI-GeneID:
127504204
NCBI-ProteinID:
XP_051734693
LinkDB
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Position
21:complement(104148..113334)
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AA seq
540 aa
AA seq
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MFLFPVGLYRGRTGNMAFNFGGASGSAGLSGTGFGAATTTSASTGFGFGSGSAGAFGGFG
PTTTSAGAGTSFNFSTPSNAGTSLFGSSQNKGFGFSSALGASAAPGTGFGTLGGTGLGFG
GFGGIQTNQTQQGVGVGGLFSQQASQSSQLYNTASALSAPSVLSDERDSILAKWNQLQAF
WGVGKGYFSSSAPPVEFSQENPFCRFKAVGYSCVPGVKDEDGLVALALNKKEADVRSQQQ
QLVESLHRVLGGNQTLTVNVEGVRALPDDQTEVIVYLVERSPNGTSKRVPASTLYNYMEQ
MNVKSQLQQLGVFMTVSRTALTPAQLKQLLQNPPAGVDPIIWEQAKVDNPDPEKLIPVPM
VGFKELLRRLKIQDQMTKQHQTRVDIISNDISELQRNQATTAAKITQYKRKLMDLSHRVL
QVLIKQEVQRKSGYAIQLDEEHLRVQLDTIQSELNAPTQFKGRLNELMSQIRMQNHFGAV
RSEERYRVDADLLREIKQHLKHQQEGLSHLISVIKDDLNDIKTIEDGLHDSIHGRSSKLS
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgttcttgtttccggtcggactgtatcgtggcaggaccggaaacatggcgttcaacttc
ggcggcgcgtcaggcagcgctggtctttctggcactggctttggagccgcgaccacgaca
tccgcgtccacgggcttcggtttcggatccggtagcgcgggtgcgttcggaggattcggc
cccacaaccacctccgccggcgctggaaccagcttcaatttctccacgccgtcaaacgca
ggtacgagtctcttcggaagctctcagaacaagggcttcggcttctcgtccgctctgggt
gcgagtgcggcgccggggacgggattcggcactctgggcggaaccgggctggggttcgga
ggattcggggggatccagaccaatcagacccaacaaggtgtaggtgtaggtggtctgttc
agccagcaggcgtctcagtccagtcagctgtataacacagccagcgctctctccgccccg
tcggtcctcagcgatgagcgcgactccattctggccaagtggaaccagctgcaggcgttc
tggggcgtggggaagggttacttcagcagcagcgccccgcccgtggagttcagccaggag
aaccccttctgccgcttcaaggcggtgggctacagctgtgttcccggtgtgaaggatgag
gatggtttagtggctctggctctcaataagaaggaagctgacgttcgctctcagcagcag
cagttggtggaatcgctgcacagggttctgggaggaaaccagacgctgacggtgaacgtg
gagggagtgcgagcgttacctgacgaccagacggaggtgatcgtttatctggtggagcgt
tctccgaacggcacgtccaagcgagttcccgcgtccacgctctataactacatggagcag
atgaacgtgaagtctcagctgcagcagctgggcgtcttcatgaccgtcagtcggaccgcg
ctgacgccggcgcagctgaagcagctgctgcagaacccgcccgcaggtgtggaccccatc
atctgggaacaggccaaagtggacaatccagacccagagaagttgattccagtgcccatg
gtgggcttcaaagagctgttgcgcagactgaagatccaagatcagatgaccaaacaacac
cagacccgagtggacatcatctccaacgacatcagtgaactgcagagaaatcaggccacg
accgccgccaaaatcacacagtacaagcgcaagctcatggacctctcgcaccgagtcctg
caggtgctgattaaacaggaagttcagaggaagagtggttacgccatccagctggatgag
gagcatctgagagttcagctggacaccatccaatcagagctcaacgctcccacacagttc
aaggggcgactgaacgaactcatgtctcagattcggatgcagaatcatttcggagccgtt
cgttcagaggagcgttaccgtgttgatgccgacctgctgagagaaatcaaacagcatctg
aagcatcagcaggagggtttgagtcacctgatcagcgtcattaaagacgatctgaacgac
atcaagacgatcgaagacggacttcacgacagcattcacgggcgcagcagcaaactcagc
tga
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