Ctenopharyngodon idella (grass carp): 127504565
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Entry
127504565 CDS
T08802
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127504565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127504565
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127504565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GTP_EFTU_D4
DO-GTPase2
UBA_RAD5A
Motif
Other DBs
NCBI-GeneID:
127504565
NCBI-ProteinID:
XP_051735294
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Position
22:complement(21234767..21271316)
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AA seq
682 aa
AA seq
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MSRHRNVRGYNYDEDFEDDDMYGQSVEDDYCISPATAAQFIYSRQDSRQARQVETVEEEE
YEEEEEMPTSPTITSTLDPLQQGQLYSCLDQMRAVLGDSIPDSTLIQAALKYDCDPQRAL
DFILTEENTNTHTPPARTNTLPEPTATAAPQKAKARDTPDSRVEAEVVPKVARMTVSGKK
QTMGFDVRSAEENGVVASSVRRGPSPEVTAAPTTETPSKPGAVSEDSNAPTPSRPAGKSK
QQLNIRAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQEAKKA
GKASFAYAWVLDETGEERDRGVTMDVGMTKFETDSKVVTLMDAPGHKDFIPNMITGAAQA
DVAVLVVDASRGEFEAGFEAGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEIV
SKLGHFLKQAGFKDSDVYYIPTSGLSGENLTTRSKVAELTAWYTGPCLLEQIDAFKPPQR
SVEKPFRLCVSDVFKDQGSGFCVTGKVEAGFIQTGDKLLAMPPNETCTVKGITLHDEALD
WAAAGDHVSLTVTGMDIIKINIGCIFCDPKEPIRSCTRFRARILLFNIEVPITKGFPVLL
HYQTISEPGTIRKLVSILHKSSGEVLKKKPKCLSKGQNAVVEIQTQRPVALELYKDYKEL
GRFMLRYVGSTIAAGVVTEIKE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgccacaggaatgtccgaggttataactacgacgaagattttgaggatgatgac
atgtacgggcagtcagtggaggatgactactgcatctctcctgccactgccgcacagttt
atctactcacgtcaagactcgaggcaggctcgacaagtagagaccgtggaggaggaagaa
tatgaggaggaagaggagatgccaacctctccaaccatcacaagcacactagacccacta
cagcaaggtcagttgtattcctgtttggatcagatgagagcagtactgggagactcaatt
ccagactctacactgattcaggcagctcttaaatacgactgtgaccctcaacgggccctt
gatttcattctaaccgaggagaacaccaatacacacacccctccggcccgaaccaacacg
ctgcctgagcctaccgccacagctgcaccacagaaagcaaaagcacgggacactccagac
agtcgtgtcgaagcagaggttgtccctaaggttgcccggatgactgtgtcaggcaagaag
cagaccatgggctttgatgtgcgaagtgcggaagaaaatggcgttgttgcctcatcggtt
cgcagaggaccgagtccagaggtcaccgctgcaccaaccacagagaccccatccaaaccg
ggggctgtgagtgaagactcgaacgccccgaccccatctcgaccagctggaaagagcaaa
cagcagctcaacatccgtgccgaactggagaaaagacaaggaggaaaaccgttactcaac
ctggtggtcataggtcatgtagatgctggtaagagcactctcatgggtcatctgttatat
ctgctggggaacgttaataagagaaccatgcataaatatgagcaggaggctaagaaagcc
ggcaaggcctcgttcgcctatgcgtgggtactggatgagacaggagaggaaagagacaga
ggagtgactatggatgtgggcatgacaaagtttgagactgactcgaaggttgttactctg
atggatgcaccaggacacaaagacttcattccgaacatgatcacaggggcggcacaggca
gatgtggctgtgttagtcgtagatgccagccgcggggagtttgaggccgggttcgaggca
ggggggcagacccgtgagcacggcctgctggttcgatccctcggagtcacgcagcttgct
gttgctgtcaacaagatggaccaggttaactggcagcaggagaggttccaggaaatcgtc
tctaagctcggtcactttctgaagcaggctggttttaaggattctgatgtgtattacatc
cctaccagtggcctatcaggagagaatctgaccactaggagcaaagtagcagaacttaca
gcctggtacactggaccatgcctactggaacaaatagatgcatttaaacctccccagagg
tcagtggagaagcctttcaggctttgtgtctcagacgtctttaaagatcagggctctgga
ttctgtgtgacggggaaggttgaggctggcttcattcaaacaggagataaattgctggcc
atgccccctaatgagacctgcactgttaaagggatcactctccatgatgaagcgttagac
tgggcagctgccggtgatcatgtcagtctaactgtcacaggcatggacatcatcaaaata
aacattggatgtatattctgtgatcccaaagagcccatcagatcctgcacaagattccga
gcaagaattctcctctttaatatagaagttcccatcacgaaaggcttccctgtgctgttg
cattatcagaccataagcgaaccgggtactattaggaagttagtcagtatattacacaag
agcagtggagaagttctcaagaagaaaccaaagtgtttgagtaaaggacagaacgcagtg
gtggagattcaaacacagaggcctgtggctctggagctctataaggactataaagaactg
gggcggttcatgctgagatatgtgggctcgaccattgctgctggagttgtcacagagatc
aaagagtaa
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