Ctenopharyngodon idella (grass carp): 127505178
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Entry
127505178 CDS
T08802
Name
(RefSeq) serine and arginine rich splicing factor 6a isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03040
Spliceosome
cide05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127505178
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127505178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cide03041
]
127505178
Spliceosome [BR:
cide03041
]
Common components
Common spliceosomal components
SR proteins
127505178
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
Motif
Other DBs
NCBI-GeneID:
127505178
NCBI-ProteinID:
XP_051736522
LinkDB
All DBs
Position
22:30202564..30229095
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AA seq
385 aa
AA seq
DB search
MPRVYIGRLSYHVREKDIQRFFSGYGKLLEVDLKNGYGFVEFEDTRDADDAVYELNGKEL
CGERVMVEHARGPRRDRDSYGGGYYGGGGGGGAGGGGGGGRSGYSSRSRTGRDKYGPPVR
TEYRLIVENLSSRCSWQDLKVNVDFMRQAGEVTYADAHKERANEGVIEFRSYSDMRRALE
KLDGTDINGRKIRLVEDKPRRRRSYSGSRSRSRSRRRSRSRSRRSSHSRSNTRSRSRSRS
HRRRSLSRSGRRSRSKSGHKSRSKSPSSKSRSRNRKSHSRSRTHKSRSRSTSRKSRSCSD
ERKSRSKSTSKVKSDRGRSKEKSVSKKSRSRSASPMENGDGGRAKSASRSPSPQAEKSPD
RHSRSRSKSGSRSKSRSRSRSKSQD
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgggtttatatcggtaggctgagttatcatgtccgcgagaaagatatccagagg
ttttttagcggctatggaaagctgctggaggtagatctgaaaaacgggtatggctttgtt
gagtttgaagacacccgtgatgcagatgatgccgtctatgagctgaacggcaaagagctg
tgtggagagcgggtcatggtggagcacgccagaggtccccgtcgagaccgcgacagctat
ggagggggttattatggtggcggtggcggtggaggtgcaggaggaggaggaggaggagga
cgcagtggttacagcagcagaagtcgcaccggtagggacaagtatggtcctcctgttcgc
actgagtaccggctcattgtggaaaatctgtctagtcgctgcagttggcaagacctcaag
gtaaatgtggatttcatgcgccaggcaggtgaggtaacctatgcagatgcccataaggag
cgtgccaacgagggagtcattgagttccgttcttactctgatatgcggagagctctggaa
aaactggatggaacagatatcaatggcaggaagattcgcctggttgaagacaagccgcga
cgtcgtcgctcctactctgggagccgctctcggtctcgtagtcggcgtcgttctcgtagt
aggagtcgccgtagcagtcattctcggagcaacacaagatctcgttcaaggtctcgctct
caccgacggcgctccctttccaggtcaggccgcaggtctcgttccaagtcaggacacaag
tctcgctccaaatctccatcgagcaagtctcgctcacgcaaccgtaaatctcattctcgg
tcccgtacacacaaatctcgcagtcgatcaactagtcgcaaatctcgctcctgctcagac
gagcgcaagtcccggtctaagagcacttctaaagtaaagtcagatcgtgggcgctccaag
gagaagtctgtcagcaagaaatccagaagcagatctgcttcacctatggagaatggcgat
ggggggcgtgccaagtctgcttctcgctctccatcacctcaggctgaaaagtccccagac
aggcattcacgttctcgctcaaagtctggctcgcgctcaaaatcccgctcccgttccaga
tccaagtcccaagactag
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