Ctenopharyngodon idella (grass carp): 127505271
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Entry
127505271 CDS
T08802
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cide04121
]
127505271
Enzymes [BR:
cide01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127505271
Ubiquitin system [BR:
cide04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
127505271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-C3HC4_3
Sina_ZnF
zf-C3HC4_4
zf-RING_5
zf-TRAF
Prok-RING_4
PDZ_Tricorn
zf-rbx1
U-box
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
127505271
NCBI-ProteinID:
XP_051736674
LinkDB
All DBs
Position
22:complement(25682704..25726343)
Genome browser
AA seq
1026 aa
AA seq
DB search
MGFDLDRFEGFVDPDLICKLCGKVLEDPLSTPCGHVFCAACALQWLSKVNSCPVLCQKIT
TKELNHVLPLKNLIFKLDIKCDHHKRGCNRVMKLQHLSEHAEMCDFSPVRCRNEGCDAVL
NLKDVDSHMRERCEHRAVELCKNGCGLVLTLKERSEDHSCLQALKTRSGLLQTKVLSLEK
ELKRQSLSFSKREKSLLSKLSALHCELHITALTFQKKITEYKSRIDALSNSWMPLDKGED
TRSLKVTLHRTSGSLGFSIIGGRVCEEPEEHEDFSDGIYISKIVENGAADKAGLHVHDRI
IEVNGRSLSVATHDQAVEAFQTAKDPIEVEVLRRAVHKTHEPARGVNNSTQTNITLKYLK
HIETTAKLPSPPGPLCMAMLDSFNSSSQCQMARHDSPYPTDFDDGVQKDIESRGLEYEEV
DLQRKTTQDKLGLMLCYKTDDEATAIYISEIDPEGIAAKDGRVQEGDQIIQINGVDIQSH
EEAVTLLTKVESKNVTLLVARPESQDIGWLEEDRNNLADDLHMGMLEQQHNKSTHEEDGG
TTDTATLPSNHHEKDSGVGRTDESTRNDESSEQDILGDDQNSLCDTLPENHKKYSEGTFE
SGDTFKSDSFLSADNGDSGNFLCIPGTACEHFQKQLELKCLVNGNGLEGFLEHDDALYGK
TVSVNCDDQEAQMLNEELLNIELECLSIIRAHRLQTEGDDQQAKNCCTKHLTEQINTEVR
KDLINNQVDNEGSTSAYNTGESCWSLHPVLESDSPDSQRMVPGDKSKSSPMHRRNSTTAC
SKHHLSPIQEISPTKSLPGVPEVTNQGKRKQSKKRNPRKSLLTSLHHSSYKNTYIPAHAQ
HYQSYMQLIQQKSSVEYVQSQVSLASLCKNPETTPTNARPKMGWKVKIRSDGTRYITKRP
IRDQLLKERALRIREERCSATTDDDAASELKLGRYWNKEERKQHAAQAKERRELMKQCHM
ENKGQTGAINNKEEPDIIQLSRKKMMKRRNKRIFDNWMTIQELLTHGTKSTDGTRLYNSF
LSVTTV
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgatctagaccgttttgagggttttgtggatccggacttaatctgtaaactg
tgtgggaaagttttagaggatcctctcagcactccgtgtggacatgtcttctgcgccgcg
tgcgcgctacagtggctctccaaagtcaacagctgccctgtcctgtgccaaaagatcacc
accaaagagctgaaccacgtcctgcccctaaaaaacctcatttttaagctggacatcaag
tgcgaccaccataaacgaggctgcaaccgggtaatgaagctccagcatctttcagagcac
gcggagatgtgcgacttctctccggtcagatgcaggaatgaaggatgcgacgcggtgctc
aacctgaaggatgtggattcacacatgcgggagagatgcgagcacagggcggtagagctc
tgtaaaaatggatgtggactcgtgctgacactcaaggagaggtcggaggaccacagctgt
ctccaagcacttaagacacgcagcggtctcctccaaaccaaagtgctgagtctggagaaa
gagctgaagcgtcagtccctgagcttcagtaagagagagaagtctctcctctccaaactc
tccgcgctccactgcgagctgcacattacagcgctcacatttcagaagaaaatcaccgag
tacaagagcaggattgacgcgctgtcaaacagctggatgcctctcgataagggagaagat
acaaggagcctcaaagtcaccctccacagaacatcaggatcacttggattcagtatcatc
ggaggaagagtgtgtgaggaaccagaggagcatgaggatttcagtgatgggatctatata
tccaagatagtggaaaacggagcagctgacaaggccggactgcatgttcatgacaggatt
attgaggtaaacggaaggagcctttccgtagctacccatgaccaagctgtagaggccttc
caaactgcaaaagaccccattgaggttgaggtactgcgcagggcggtgcacaagactcat
gaaccagcccgaggagtgaacaacagtactcagaccaacattacactgaaatatttgaaa
catatcgagactacggccaagttaccgtcacctccgggaccactgtgtatggctatgctg
gatagcttcaattcatcctcacagtgtcaaatggcaagacatgactccccttaccccaca
gacttcgatgatggcgtacagaaagacattgagagtagaggactggaatatgaggaggtg
gatctgcagaggaaaactactcaggataagcttggcctgatgttatgttacaagactgac
gatgaggccactgccatttatattagtgagattgatccagaaggaattgcagcaaaggat
ggcagagtccaggaaggagaccagattatccagatcaatggagtggacatccaaagccat
gaggaggcagtgacacttctgaccaaggtggagagtaagaatgtgaccctcctagtggct
cgaccagaaagtcaggatattggctggttggaggaggatagaaataacttggcagatgac
ttgcacatgggcatgctggagcaacagcataacaagagcacacatgaagaagatggaggc
actactgatacggcaaccttaccgtccaaccatcacgagaaagacagtggcgttggccgc
actgatgaaagcactcgtaatgatgaaagctcagagcaggacatcttgggagatgatcag
aattccctttgtgacacactcccagaaaaccacaagaagtatagtgaaggcacttttgaa
agtggggacactttcaaaagtgactccttcctttcagctgacaatggagacagtggaaac
ttcctttgtatacctggcacggcatgtgaacatttccagaaacagcttgaactgaaatgc
ctggtcaatggtaatggtcttgagggatttctggagcatgacgacgcactatatggaaag
acggttagtgtaaactgtgatgatcaggaggctcagatgcttaatgaggagttgctgaac
attgagctggagtgcctgagtatcatacgagcacacaggcttcaaactgagggtgatgat
cagcaagccaaaaattgctgcaccaagcacttaactgagcaaataaatactgaagtccgt
aaggacctcatcaataaccaggtggacaacgaaggctctactagtgcttacaacactgga
gagagctgttggagcttacatcctgttctggagtcagattctcctgactcccaaaggatg
gttcctggagacaagagtaaaagttctcccatgcatagacgcaactcaacaacagcatgc
tccaaacatcacctctctcctattcaggagatcagccccaccaagagtttacctggagtt
ccagaggtcacaaatcaggggaaaagaaagcagagtaagaaaaggaacccaaggaagagt
cttttgacttccttacatcattcctcatacaagaacacctacatcccagcccatgcacaa
cattaccaaagctacatgcaacttatccagcagaagtcgtctgtggagtatgtccagagt
caagtcagcttagccagcctgtgcaagaacccagaaaccactcccactaatgccaggccc
aagatggggtggaaggtaaagatccgtagcgatggaacaaggtatatcaccaaaaggccc
atcagggaccagctgctgaaggagcgtgctttgcgcattcgggaagaacgctgcagcgca
actacagatgacgatgcagcaagtgaactaaagctgggtcgatactggaacaaggaggag
cgcaaacagcatgcggcacaagctaaggaacggcgggaactcatgaagcagtgccacatg
gagaacaagggacaaacaggagcaattaacaacaaggaggaacctgatattatccagctg
agccgtaaaaagatgatgaaaaggaggaacaagaggatatttgacaactggatgaccatt
caggagctgctgacacatggcacaaagtccacagatgggactagactgtataattccttt
ctatctgtgactacagtgtaa
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