Ctenopharyngodon idella (grass carp): 127505594
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Entry
127505594 CDS
T08802
Name
(RefSeq) tiggy-winkle hedgehog protein
KO
K11988
sonic hedgehog
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
127505594
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cide01002
]
127505594
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cide00536
]
127505594
Peptidases and inhibitors [BR:
cide01002
]
Cysteine peptidases
Family C46: hedgehog family
127505594
Glycosaminoglycan binding proteins [BR:
cide00536
]
Heparan sulfate / Heparin
Morphogens
127505594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
DUF7764
Hom_end_hint
Vint
Ribosomal_S6e
Cas_Csy1
Alpha_L_fucos
DUF7467
Motif
Other DBs
NCBI-GeneID:
127505594
NCBI-ProteinID:
XP_051737211
LinkDB
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Position
2:11441478..11448008
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AA seq
416 aa
AA seq
DB search
MDVRLHLKQTAFLCFISLLLTPCGLACGPGRGYGNRRHPKKLTPLAYKQFIPNVAEKTLG
ASGKYEGKITKNSERYKELIPNYNPDIIFKDEENTNADRLMTKRCKDKLNSLAISVMNQW
PGVKLRVTEGWDEDGHHSDESLHYEGRAVDITTSDRDKSKYGMLSRLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSGTVTLADGRRKRIRDLKVGDRVLAADERGNVLLSD
FIMFMDHDPKTRRQFIVIETSEPLTKLTLTAAHLVFIGNASDGLGVTATFASNVKPGDKV
LVSDGTGKTLKSVTVKRIYTEEHEGSYAPVTAHGTIIVDQVLASCYAVIENHKWAHWAFA
PVRLSHKLMTWLSPARDSNVTFQEDGIHWYSNVLFHIGSWLLDRDSFHPLGISHLS
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggacgtaaggctgcatctgaagcaaactgcttttctgtgttttatcagcctgcttttg
acgccttgtggattagcctgtggtcctggtagagggtatggaaaccgaagacacccaaag
aaattaaccccgctggcttacaagcaattcattcccaacgttgccgagaaaacgcttggg
gccagcggcaaatacgaaggcaaaatcacaaagaattcagagagatataaagagctgatt
ccgaattataatcccgatatcatctttaaagacgaggaaaacacaaacgctgacagactg
atgaccaagcgctgtaaggacaagttaaattcattggcgatatccgtcatgaaccagtgg
ccgggcgtgaaactgcgcgtcactgaaggctgggatgaggatggtcaccattccgacgaa
tctttgcactacgagggacgggcggtggacataactacctcagacagggataaaagcaag
tatgggatgctatctaggcttgcagtggaggcaggattcgactgggtctattacgagtct
aaagcccacattcactgctccgtcaaagcagaaaattcggtcgcagctaaatcaggggga
tgctttcctggatctggtacagtgacacttgcagacgggaggaggaaacgtatcagagat
cttaaagtgggcgaccgggttttagctgccgacgagagaggaaatgtcttattaagcgac
ttcattatgtttatggaccacgatccgaaaacgagaaggcaattcatcgtcatcgagacg
tcagagcctttaacaaagctcaccctcacagccgcgcacctagtcttcattggaaacgct
tcagatggtttaggtgtaacagcaacatttgccagcaacgtgaagcctggagataaggtt
ttggtgtcggatggcacaggcaagaccctcaagagcgttacagtgaagaggatttacact
gaagagcacgagggctcttacgcgccagtcacagctcacggaaccataatagtggatcag
gtgctggcttcgtgctacgcggttattgagaaccacaaatgggcacactgggcttttgca
ccggtcaggttaagtcacaagctgatgacgtggctttctccggctcgtgattcaaacgtc
acttttcaggaggacggcatccactggtactcaaatgtgctgtttcacatcggctcttgg
ctgctggacagagactctttccatccactcgggatttcacacttaagttga
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