Ctenopharyngodon idella (grass carp): 127506364
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Entry
127506364 CDS
T08802
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b isoform X1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cide04040
]
127506364
Ion channels [BR:
cide04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
127506364
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Ank_KRIT1
GIY_YIG_domain
Motif
Other DBs
NCBI-GeneID:
127506364
NCBI-ProteinID:
XP_051738739
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Position
23:complement(20207821..20252374)
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AA seq
1110 aa
AA seq
DB search
MQVGKEFVRQNSFYKCVINAEETDLDSADVFELAFKGKASAIDHLIQKSPELSFRDENGA
SPLHYASAGGNVDIIRLIVSTVGPEELNVQDEQGRTPLHWAVEQDQQQSCELLLELGADP
NILNSAMMGLLHLAVTKRYNHLVEVLLSCDRTDVNLKGDVGNTPAMLACSNNNCQALHSL
FKHGAKMCVQNKLGHYAIHTVAFAGAKEAMELVLKIGEELGISTSVHINYLDKTKSTPLH
LAVRGGNIEVIKLCIIKGARVDQQQCDKSTALHFACTQGALDAVKIMLSSYNRVEDIINV
RDGANQTPLHRATLFDHVELAEYLISKGAEIDCIDCKGLSPLLMASNCGAWKTVAFLLST
GADFKIKDKAGRNFLHFVILQPKGLKNLPETVLQSNAVKEMLSDEDVEGCTPLHYACKLG
IHDSVKNMLGLNIFLGQKSREKKSALHFAAEYGRLNTCHRLLESLTDSKMLNDWDEKGLT
PLHLASRAGHAQVVELLLRRGALFQSDYKGWSCLHHAAAEGYTQTMKILLAANVKLLDGT
NEDGNTALHIAAQAGHVGAVLLLLDRGAEITLNNADNSFLHEAVRNEKKDVVNATIESER
FAEALTSFKTTSRCVVMDIIEFLPESFRHLLDRCIKESDHDANSPDYHIKYDFRWLQAPL
QLKKFAKTDKTMKFQPLAAMNAMVRYNRLELLTHPVSRKYLEMKWKAYGSKVHLLNLAVY
LLGLLPLTYLILNLRPSQNISANGTSVIMVPVSFSEQNYLISVCIIMVLVLNVYSICKEL
VQLAQQRIYYFTDFSNPADWSAAISSLVFVIPMCFNVDNTWQWQAGAFAILTSWIGFLLY
FQRFERIGIYVVMFGGIVRTLVCIMVLFIFLLLAFGLSFYALMLHRAEFSSISLALAQTF
VMTVGELNYQSTFLNTYEEGHMAFPAVTYCVFVFFVLLMPILLMNLMIGLAVGDIAEVQR
NAELKRIAMQIDLHTALEEKLPYWFLERVDKSSITVYPNKCKKLLMQVFLNGEIQNTVRT
RLNLCSRQGGHLERELHKQKNRMKAMSCMLEKQHNLLKLIIQKMEITSEADEYDGPQHPR
ALKQPASSSSQKSKDDGGEFEAGGDFTQLQ
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgcaggttggaaaggagtttgtgaggcaaaacagcttctacaagtgtgtgataaatgca
gaggaaacagacctggattctgcggatgtatttgagttggctttcaaagggaaggcttct
gccattgaccacctgatccagaaaagtccggaactaagcttcagggatgagaatggagct
agcccactgcactacgcctcagccggaggaaacgtggatataattcggcttattgtttct
actgtgggtcctgaggagctgaatgtacaggatgagcagggcagaactcctctgcactgg
gctgtggagcaggatcaacagcagagctgcgaattactgctggagctgggtgctgacccc
aacatcctcaacagtgctatgatgggccttctgcatctggctgtcacaaaaagatacaat
catcttgtagaggtccttctgtcctgtgacagaacagatgtcaatctgaagggtgatgta
ggaaacacccctgcaatgctggcctgcagcaataataattgccaagctctccattctctt
ttcaaacatggtgccaagatgtgcgttcagaataaactgggacactatgccatccataca
gttgcttttgcaggtgccaaagaggccatggagctggttttgaaaattggagaagagctg
ggtatttccacttcagtgcacattaattatttggataaaaccaaaagcacccccctccat
ctagctgtacgtgggggcaacattgaggtgatcaaactttgcatcattaaaggagccaga
gtggatcagcaacagtgtgacaaatccacggccctccactttgcctgcactcagggtgct
ctggatgccgtcaaaatcatgctttcctcttacaacagagtggaagacatcatcaacgtc
agggatggagccaaccagacccccttacatagagccacattgtttgatcatgtcgagttg
gctgaatatcttatttcaaagggagcagaaattgactgcattgactgtaagggactgtct
ccactgctgatggcctccaactgcggtgcttggaaaaccgttgcatttttactgtcaact
ggtgccgatttcaaaatcaaagacaaagcaggtcgaaacttcctccactttgtcattctt
caaccaaaagggctgaaaaatcttcctgagacagtcttgcagagtaatgccgtgaaggag
atgttgtctgatgaggatgttgaaggctgcactcctctgcactacgcctgcaaacttggc
attcacgattcggtcaaaaatatgctgggtctcaatatcttcttgggtcaaaagtcacgg
gagaagaaatcagcacttcacttcgctgcagaatatgggcgtttaaacacatgccacagg
ctgctggagtccctcacggactccaaaatgctgaacgattgggacgaaaagggcctgacg
cccctccatcttgcttcaagggcaggacacgcacaagtagtggagctgctgcttcggaga
ggagcgctgtttcaaagtgattacaaaggctggtcctgtttacatcatgctgcggctgag
ggatacacacagacaatgaaaatcctcctcgcagccaatgtcaaactgctggacggaaca
aatgaagatgggaacacagcacttcacattgctgcacaagcgggacatgtaggtgctgtt
ttgctgttattggacagaggagctgaaatcactctcaacaatgctgacaactcttttttg
catgaagctgtgcgaaatgagaaaaaagatgtagtgaacgccaccatcgaaagtgagagg
tttgctgaggcattaacatcatttaaaacaacatctcgctgtgtcgtgatggacatcata
gagttcctcccagagtctttcaggcaccttctggaccggtgtattaaagagtctgatcac
gacgccaacagtccggattatcatatcaagtacgattttcggtggcttcaagctccttta
cagttgaagaagtttgctaaaacagataaaacaatgaagttccaaccactggcagccatg
aatgcaatggtgcggtacaaccgtctggaactcctcactcaccccgttagccgaaaatac
ctggagatgaagtggaaggcgtatggaagcaaggttcatttgctcaacctggctgtctac
ctgcttggcttgttgcccctcacatacctcatcctcaatctgagaccaagccagaacatt
tctgccaatggcacatctgtcatcatggtgcccgtatcttttagtgagcaaaattattta
atctcggtctgtataatcatggtgcttgtcttgaatgtgtattccatttgcaaagagttg
gtgcagttggctcagcagcggatatattacttcactgacttctctaaccctgctgactgg
agtgcagctattagctctttagtctttgtcattcccatgtgtttcaatgtagacaacaca
tggcaatggcaggctggagcttttgccattttgacttcatggatcggtttcctactctac
ttccagaggtttgagcgaattggaatttacgtggtgatgtttggtggaatcgttaggacc
cttgtgtgcatcatggttcttttcatcttccttttgctggcattcggattgtccttctac
gctttgatgcttcaccgggctgagttcagctccatcagccttgccctagcccagacgttt
gtgatgacagtgggagagctgaactaccagagtacatttctgaacacttatgaagaaggc
cacatggcattccctgcggtcacctattgcgtgtttgtgttttttgtgcttctcatgcct
attcttctcatgaatctaatgattggtttggcagtaggagacattgcagaggtacagaga
aatgcagaattgaaacggatagccatgcagatagatcttcacactgcccttgaggagaaa
ctaccttactggttcctagagcgagtggacaaatcatctattaccgtctatcccaataaa
tgcaagaaactgctgatgcaggtcttccttaacggtgagatccagaacacagttcgtacc
cgtctgaacctctgctcacggcagggagggcatctagagagagagctgcacaaacagaaa
aacaggatgaaagcgatgtcctgtatgctggagaaacagcataacctgctcaagctgatc
atccagaagatggaaatcacttctgaggctgatgaatatgatggcccacagcaccctaga
gctctgaaacagcccgcttcctcctcatctcagaagtcaaaggatgatggtggagagttt
gaagcaggaggggacttcacacagctccagtga
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