Ctenopharyngodon idella (grass carp): 127507441
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Entry
127507441 CDS
T08802
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
127507441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
LRR_9
Ig_2
LRRNT
DUF7617
Ig_6
Sp38
DUF6821
Syndecan
Motif
Other DBs
NCBI-GeneID:
127507441
NCBI-ProteinID:
XP_051740515
LinkDB
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Position
24:complement(10116755..10335013)
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AA seq
650 aa
AA seq
DB search
MINKMTSSLMQQTMRGPRWNRALSDPLFVLSLALQLLVVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLRDVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRNIEIGA
FNGLANLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVRLDELEMSGNQLSIIRPGSF
KGLVHLQKLWMMHAQIQTIERNAFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCASPTSHKGRYIGELDQNYFHCYAPVIVEP
PADLNVTEGMAAELKCRANSLTSVSWITPNGSIMTHGAYKVRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENSNFSYFTTVTVETTEASHDEGHPTVQQKGGPT
PSSGIWETLPPSFTTTTTTTARTPMSTKATDKTYTIPVTALIDGSLNTLDEVMKTTKIII
GCFVAITLMAAVMLIIFYKMRKQHHQQNHHAPTRTIEIINVDEDCVTSGPTIEGHLALPP
LEHEHLNHLNYTAYKSMYNHASTINSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgataaacaagatgacctcctccctgatgcagcagacgatgagaggtcctaggtggaac
cgggccctgtccgacccattgttcgtgctgtcactggccctgcagcttctggtggtggct
ggcctggtgcgagcgcagacctgcccctccgtctgctcttgtagcaaccagttcagcaag
gtcatttgtacgcgacgtggccttcgagatgtacctgatggtatttccaccaacacaagg
tacctgaaccttcaggagaacctcatccaggtgattaaggttgacagcttcaagcatctg
aggcacctggagatcctgcagctcagcaaaaaccatatccgcaacattgaaatcggagct
ttcaatgggctggccaacctcaacactctggagctcttcgataaccgtttaaccacaatc
cccaatggggctttcgagtacctgtccaaacttaaggagctttggttgaggaataaccct
attgagagtataccctcttatgccttcaaccgtgtaccatcgctgcgaaggctagacttg
ggcgagttgaaaaggctctcttatatctcagaaggtgcctttgaaggcctaagcaacttg
cggtacctgaacctgggcatgtgcaacttgaaagagatccccaacctcattcctcttgtt
cgtttggatgagttggagatgtcaggaaaccagctctctataattaggccagggtctttc
aaaggcctcgtccacttacagaaactgtggatgatgcatgcgcagatccagacgatcgag
agaaatgcctttgatgatcttcagtcccttgtggagctcaatttggcccacaataacctt
accctcctgcctcatgacctcttcaccccactacaccacttggagagggtacacttgcac
cacaacccctggaattgcaactgtgacatcctctggctcagctggtggctaaaggaaatg
gtgccggccaataccagttgctgtgcccgctgtgcgtcacctactagccacaaagggcgc
tacattggcgaactcgaccagaactatttccattgttatgcaccggtgatcgtggagcca
ccagcggacctgaacgtgactgagggaatggcagcagaactgaaatgtcgagcaaattct
ttgacctcagtcagctggatcacgcccaatgggtctatcatgactcacggggcgtacaag
gtacgcatttccgtgctcaacgatgggacgttaaactttaccaatgtcacgatgcaggac
actggaacgtacacttgtatggtgagcaactcagcaggcaacacaacagcctcggctacg
ctcaatgtgtcctcgacagagaacagcaacttcagttacttcactacagttaccgtcgag
accacagaagcatcacatgatgagggccacccaacggtacaacagaaaggtggtcccact
ccttcttctggaatttgggagaccttgccaccttccttcaccaccactaccaccaccaca
gcacggacgccaatgtccaccaaggccaccgacaagacctacaccatccctgtcacggcc
ctgatcgacggctccctcaacaccttggatgaggtcatgaagaccactaagatcatcatc
ggttgctttgtagccatcacgcttatggcggccgtcatgctgatcatcttttataaaatg
cgcaaacagcatcaccagcagaaccaccacgcaccgacacgaaccattgagattatcaac
gtggatgaggattgcgtaacgagtggacctaccatagagggccaccttgcccttccccca
ctggagcatgagcacctgaatcacctgaattacactgcttacaagagtatgtacaaccat
gcctccaccatcaattctatacacagctctgcccacgaacctttgctaattcgggccagc
tcaaaagacaatgtacaagaaacccagatctga
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