Ctenopharyngodon idella (grass carp): 127507568
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Entry
127507568 CDS
T08802
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03022
Basal transcription factors
cide03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127507568
09124 Replication and repair
03420 Nucleotide excision repair
127507568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127507568
03400 DNA repair and recombination proteins [BR:
cide03400
]
127507568
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127507568
DNA repair and recombination proteins [BR:
cide03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127507568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
127507568
NCBI-ProteinID:
XP_051740727
LinkDB
All DBs
Position
24:complement(6292303..6303854)
Genome browser
AA seq
550 aa
AA seq
DB search
MAALSEEVLLVVKRVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYADIRCQKISPDGK
AKIQLQLVLHTGESTTFHFANESTALKDRDATKELLQQLLPKFKKKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRLSLNSVEHSLANNSKQEVGISAAFLADIRPQTDG
CNGLRYNLTSDIIESIFRTYPTVKQKYAENVPHNMTEKEFWTRFFQSHYFHRDRISAGQQ
DIFSECAKQDEKGQKSMVNQGVKNPMVDLLSLEDKTLDEGYGTAMVPTTSNPSNKSLREN
SNSAIIKRFNHHSAMVLAAGLRKADAPNDQASETSSTDGNSRDSDFFQPPLKKVKLQEAI
EYDDLQGDSGRKTIALNLKKSDRYSHGPIPLQSQHYTTSQDIINSISIIQHEMRNYKPRL
TQVMSSSVASSAITALSPGGVLMQGGGQQTINQLVPTDVQSELKHLYTAAGELLRHFWSC
FPVSTPFLEEKVIKMKSNLERFQLTKLRPFQEKIQRQYLSTNLTGHLEEMLQAAYNKFQA
WQTRRMMRKT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcggctctgtctgaggaggtgttgctggtggtgaagagggtccgtcagaggaagcag
gacgggactctgtatttgatggcggagcggattgcctggggtccagaagggaaggaccgc
ttcacagtcagccatctgtatgccgacatccgctgtcagaagatcagtcctgatggtaag
gcaaagatccagctccagctggttctgcacacgggagaaagcaccacctttcattttgcc
aatgagagcacagcactgaaggacagagacgccaccaaagaactcctacagcagctcctg
cccaagttcaagaagaaagccaataaagagctggaggagaagaacaggatgttgcaggaa
gaccctgttctgttccagctctataaggacttagtggtgagtcaggtgatcagcgctgag
gagttctgggccaatcggctgagcctgaattctgtggagcactccctcgccaacaacagc
aaacaggaagtgggcatctctgctgccttcctggccgacatcagaccgcagacagacggc
tgcaacggcctgcggtacaatctgacctctgacatcatcgagtcgatcttcagaacttac
cctacagtcaagcagaaatacgctgagaacgttcctcacaacatgacggagaaggagttc
tggacgcggttctttcagtctcattacttccacagggatcggatcagcgcgggccagcag
gacatcttctcggagtgtgccaaacaggatgagaagggccagaaatctatggtgaaccaa
ggagtgaagaaccccatggtggatctgctttcactcgaggataagacattagacgagggt
tacggcacagctatggttcccactacatcaaacccctcaaacaaatcactgcgagagaac
agcaactctgccataatcaaacgcttcaaccaccacagtgccatggtgctggcggccggc
ctgcgcaaagcggacgctcccaatgatcaagctagtgagaccagcagcactgatgggaat
tccagagattcagatttcttccagccgccactcaaaaaggtgaaattacaggaagccata
gaatatgatgaccttcagggtgactctgggcgtaagaccatcgctctgaacctgaagaaa
tcagacagatattcccacggcccgattcctctgcagtcgcagcattacaccaccagtcag
gacatcatcaactccatcagcattatccagcacgagatgaggaactataaaccccgcctg
acgcaggtgatgtcgagcagtgtggctagctccgccatcacagcgctgtcacctggaggg
gttctgatgcagggcggaggccaacagaccatcaaccaattagtgcccactgatgttcag
agcgagctcaagcatttatacacggccgccggagagctgctccgacacttctggtcctgt
ttccccgtcagcactcctttcctggaggagaaggtgataaagatgaaatctaacctggag
agattccagttgacgaagctacgcccctttcaagagaagatccaacggcagtatttgagc
actaacctaacgggccacctggaggaaatgcttcaggctgcgtacaacaagttccaagcc
tggcaaacgcgccgaatgatgagaaaaacctga
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