Ctenopharyngodon idella (grass carp): 127507754
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Entry
127507754 CDS
T08802
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127507754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cide03041
]
127507754
03009 Ribosome biogenesis [BR:
cide03009
]
127507754
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127507754
Spliceosome [BR:
cide03041
]
Complex A
U1 snRNP components
U1 related factors
127507754
Complex B
127507754
Ribosome biogenesis [BR:
cide03009
]
Eukaryotic type
Pre-60S particles
Helicases
127507754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Host_attach
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
127507754
NCBI-ProteinID:
XP_051741010
LinkDB
All DBs
Position
3:20949907..20954891
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AA seq
614 aa
AA seq
DB search
MPGYSDRDRGRDRGYSSGPPRFGGSRNGPPPGKKFGNPGDRLRKKHWNLDELPKFEKNFY
QEHHEVSRRSPQDVEHYRRTKEITVKGRDCPKPIVKFHEASFPNYVMDVITKQNWTEPTP
IQAQGWPVALSGKDLVGIAQTGSGKTLSYLLPAIVHINHQPFLEHGDGPICLVLAPTREL
AQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDRG
GRSRGGRGGGYRDDRRDRHSSSRRDFNSYSQDNRNGDSYGQKKVFGNKTQNGSSGYNNNS
SSSSSFNGGYSSNGQGNFGNQSSGYGNQGYQNQQFVPSQGGVQNSMNHPPPFPFNPQQMP
QSMQFPMAPPAFPQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgccaggatattccgacagagaccgcggtcgtgacagaggctacagcagtggcccccca
cgctttggaggcagcagaaatggacctcctccgggcaagaagtttgggaatccaggcgac
cgtctgcggaaaaagcactggaacctggatgagctccccaagtttgagaagaacttctat
caggagcaccatgaggtttctcggaggtcacctcaagatgttgaacactacaggaggacc
aaagagatcacagtgaagggtcgagactgtcccaaacccatcgtgaaattccatgaagca
agctttccgaactatgtaatggatgtgatcactaaacagaactggactgaaccaaccccc
atccaagctcaggggtggccagttgcacttagtggcaaagatttggtcggcattgcacag
accggctcgggaaaaaccctctcgtacttgcttcctgctattgttcacataaaccaccaa
ccattcctggagcacggagatggccccatttgcttggtgttggctcccacccgtgagttg
gcacagcaagtccagcaggtggcggcagagtacggcaaagcttctcgcctcaagtccacc
tgcatctatggaggcgctcccaaaggaccacagatccgggacctggaaaggggggttgag
atctgcattgccacacccggaaggcttattgatttcctagaagtcggaaaaacaaatctg
cgcagatgcacgtatcttgtgctggacgaagctgacaggatgcttgacatgggttttgaa
cctcagattcggaaaatcttggaccaaattagaccagaccgacagactctaatgtggagt
gctacgtggcccaaagaggtgaggcagctagcagaggacttcctgaaggagtatgtacag
atcaacgttggtgctctgcagctcagcgccaaccacaacatcctacagattgttgatgtt
tgcaatgatggcgagaaagaggacaaactgatacgtctgctggaggaaatcatgagcgag
aaggagaacaagaccattatctttgtggagaccaaaaggaggtgtgatgaccttactagg
aggatgcgtagggatgggtggccagcaatgggtatccatggagacaaaagccagcaggaa
agagattgggtgctcaatgaattcaaatatggaaaagcgcccatcctcattgccacagat
gtcgcctccagaggactagatgtggaggacgtcaaatttgtcattaactatgactacccc
aacaattccgaggactacattcaccgcattggccgaacggctcgcagtcagaaaactggc
acggcgtacactttctttacgcccaacaacatgaaacaggctcacgaccttgtctctgtc
ctccgcgaggccaaccaagccataaaccccaagctcatccaaatggccgaagacagagga
ggtcgttcaaggggagggcgaggtggggggtatagggacgatcgccgggatcgccactcc
agcagcaggcgggacttcaacagctacagccaggacaaccgtaatggtgactcttatggg
caaaagaaggtgtttggaaacaagactcaaaatggatctagtggctacaacaacaacagc
agcagcagtagtagctttaatgggggttacagcagtaacggacagggtaactttggcaat
cagtctagtggctatggaaaccaaggctatcagaaccagcagtttgttcctagtcaaggg
ggcgttcagaacagcatgaaccaccctccaccgttccccttcaacccccaacagatgcca
cagtccatgcagttccccatggcccctcctgcattccctcagtaa
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