Ctenopharyngodon idella (grass carp): 127507811
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Entry
127507811 CDS
T08802
Name
(RefSeq) LOW QUALITY PROTEIN: PDZ domain-containing RING finger protein 4-like
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cide04121
]
127507811
Enzymes [BR:
cide01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127507811
Ubiquitin system [BR:
cide04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
127507811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
127507811
NCBI-ProteinID:
XP_051741197
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Position
24:4024525..4060799
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AA seq
721 aa
AA seq
DB search
MPEAARVHAGPRGDTRMRGRAASRRGESETAAVSLSTRMGCNLCSLQKREEHYKLLYEIS
QVNGRDLSRASHEEAVEAFRSAKDPIVVQVLRRTPLPRGQGSCQDVQVVDVCTQTEITFE
HIMALAKLRPATPPVPDICPFLLSDSCHSLHTMDQEYFEGSEYLSNMAADAERTDDFEYE
EVELCRMSSQEKLGLTLCYRTDDEDDIAIYVSEIEPNSIAARDGRIREGDRILQINGQDV
QDRQEAVAVLTNEESRNIVLLVARPEMQEEPWLDDEHSEFLEELKMEMLEEQRREEEEEM
NRAAREEEEKAKGAPEENITASCSYNPQKISPPDGSEKNVLAQIQKKLSRCLRQRREAAG
QSHDGSPSERGLEKDAPEGDRYQQLLELKCQIRNSGEYDLFYTRSSTIECSGVEHELRLL
NEELRSIELECQNIMRAHQRHPKKLADISEHPEKSDKDSSSAYNTAESSRSTPLAMDRSP
EHRMISLTNQKNLRGSSVRSGSPDHSNPSESPAEDEGSLRTRIAALSKASDVHTRQYQSY
VHLVQQQSAVEFAHGLLGMSPQVARPSEPKMEWKVKVRSDGTRYITKRPVRDRLLRERAL
KIKEERSGGMTTDDDAMSEMKMGRYWSKEERKQHLLRAKEQRRRREFMQRSRLESLRENP
LSSGEGRKEVSIIELSQRKMMKKRNKKILDNWMTIQELMTHGEKAPEGSKVHNAFLSVTT
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgccagaggctgcgcgcgtgcatgcgggtccgcgcggcgacacacggatgagagggaga
gccgcgagccgccgcggggagagcgagacggctgccgtatccctgagcacgaggatgggc
tgcaatctgtgtagtttacagaagagagaggagcactacaaactactgtacgagatctca
caggtgaacgggagggatctgtcgagagcgagccatgaggaggcggttgaagctttccgt
agcgccaaagatcccatcgtggtgcaggtgctccggcggacacctttaccccggggtcag
gggtcatgccaggatgtccaggtggtggacgtgtgcacgcagacggaaatcaccttcgag
cacatcatggctttggccaaactccgtcctgccacaccacccgtgccggacatctgcccg
ttcctcctgtcggacagctgtcactctctgcacacgatggatcaggaatacttcgagggc
agcgagtatctctccaacatggcggcagacgccgagaggaccgatgactttgagtacgag
gaggttgaactgtgtcggatgagcagtcaggagaagctcggcctcacgctgtgttacagg
acggatgatgaggacgacatcgccatctacgtcagcgagatcgagccgaacagcatcgcc
gcccgagacggtcgaatccgagaaggagaccgtattttacagatcaatgggcaggacgtt
caggacagacaggaagctgtggccgttctaactaatgaagaaagcaggaatattgttctg
ctggtcgccaggccggaaatgcaggaggagccgtggctggatgatgaacacagcgaattc
ttggaggagctgaagatggagatgctggaggagcagaggagagaagaggaggaggagatg
aacagagcggccagagaggaggaagagaaggccaaaggagctccagaagaaaacatcacg
gcgtcctgctcctacaatccccagaagatcagtccaccggacggatcagagaagaacgtc
ctcgctcagatccagaagaaactgtcgaggtgtctgcgtcagcggcgagaggccgccggt
cagagccacgacggctcgccgtccgaacgcggtctggagaaggacgctcccgaaggagac
cgatatcagcagctgctggagctcaagtgtcagatccgcaacagcggcgagtacgacctc
ttctacacgcgcagcagcaccatcgagtgcagcggcgtcgaacacgagctccggctgctc
aacgaggagctgcgcagcatcgagctggagtgccagaacatcatgcgggcgcatcagcgg
catccgaagaagctggcggacatcagcgagcatccggagaagtcggacaaggacagttcg
agcgcgtacaacacggccgagagctcgcgcagcacgccgctcgcgatggaccgttcgccg
gagcacaggatgatcagcctcaccaaccagaagaaccttcgcggctcgtccgtcaggagc
ggcagtcccgaccacagcaacccttcggagtctcccgcggaggacgagggatccctgagg
actcggatcgccgccttatcgaaagcgtccgacgtccacacgcgacagtaccagagctac
gtgcacctggtccagcagcagtcagctgtggagtttgcccatggcctgctgggaatgagt
ccgcaggtcgcccggccttccgaacccaagatggagtggaaggtgaaagtccggagcgat
ggaaccaggtacatcaccaagcgcccggtccgagatcgtctactccgggagcgagccctt
aaaatcaaggaggaacgcagcggcggtatgacgaccgacgacgacgccatgagcgagatg
aagatgggacgctactggagcaaggaggagcgcaaacagcatctcctgcgggccaaggag
cagcggcggcgccgggagttcatgcagcggagccgcttggaaagcctgcgggagaatccg
ctcagcagcggagagggacgcaaggaggtgagcatcatcgaactcagccagcgcaagatg
atgaagaagcggaacaagaaaattctggacaactggatgacgattcaggagttgatgacg
cacggggagaaagcgccagaaggatccaaagtgcacaacgccttcctgtcggttacaact
gtatag
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integrated database retrieval system
