Ctenopharyngodon idella (grass carp): 127508022
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Entry
127508022 CDS
T08802
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127508022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127508022
03036 Chromosome and associated proteins [BR:
cide03036
]
127508022
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
127508022
Coactivators
SAGA/TFTC/STAGA complex
127508022
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
127508022
STAGA complex
127508022
TFTC complex
127508022
SAGA complex
127508022
SLIK complex
127508022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
TFIID_NTD2
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_Nup120_160
PEP5_VPS11_N
WD40_like
eIF2A
VPS8_N
PROPPIN
LisH_TPL
LisH_PAC1
DUF4144
Motif
Other DBs
NCBI-GeneID:
127508022
NCBI-ProteinID:
XP_051741506
LinkDB
All DBs
Position
1:complement(39149857..39158210)
Genome browser
AA seq
744 aa
AA seq
DB search
MAAVQDGPMDLDAEKETKPEILSDGTSNLSGNTGSGALSSSPLTAAPAGGAPKLEDQQTL
IAVLQFLKRNKLSESVDILRREAGLAEDLEDPQAADGSGGKDDGDGGDATSLLSRVSIAA
AAAPQSTLTPMPVKSAEDQPDVRVVLSAYSQQGDPSLYQVYYSDLKNFIESVLDCHRAEL
SQLFYPLFVHMYLELVYNNHENEAKAFFEKFSGDQECYYLDDLRVLCGLTKKEHMKGNEA
LLDFRTSRFVLRISRDSYQLLKRHLQERHNNQIWNIIQEHLYIDIFDGMPRSKGQIDSMS
GSLAGEAKREVNKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKTKKDSMGSKSKK
QDPNAPQQNRIPLPELKDSDKLDKIMYMKESTKRIRLSPENLPSICFYTFLNAYQGLTAV
DFTDDSSLLAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDEKTASES
KILHGHSGPVYGVSFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPF
GYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGSTDRTIRLWDV
LNGNCVRIFTGHKGPIHCLAFSPNGKFLASGSTDGRVLLWDIGHGLMIGELKGHTDTIYA
LKFSRDGEILASGSMDNTVRLWDSMKAFDEVETDDFTAATGHIHLPDNSQELLLGTYHSK
STPVTHLHFTRRNLLLAAGAYNSQ
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatggaccgatggatctggacgcagagaaagagacaaagccagaa
atacttagcgatgggacgtcaaacctctcggggaacactgggagcggggcgctctcctca
tctcccctcaccgctgcccccgccggcggagccccgaagctggaggaccaacaaactttg
atcgcagtgttgcagttcctaaagcggaataaactgtcagagtcggtggatattctgagg
cgggaagccggtcttgcagaagacctggaggacccgcaggctgctgatggcagcggaggg
aaggatgacggagatggaggggatgcaacctctctgctcagccgggtgtctatcgcagca
gcagccgccccccagagcacgctgactcctatgccagtaaagagcgcagaagaccagccg
gatgttcgtgtggtgctgtcagcatacagccagcagggggacccctctctatatcaggta
tattacagcgacctgaagaacttcatagagtcagtgctggactgccaccgagcggagctg
tcccagctcttctaccctctgttcgttcacatgtacctggagctggtctacaacaaccat
gagaacgaagccaaggctttctttgagaagttcagcggtgatcaggagtgttactatctg
gatgacctgcgtgttctctgtggcctcactaagaaagagcacatgaaggggaacgaggcc
ctgctggatttccgcaccagccgttttgtgttgcgcatctccagagactcgtaccagctg
ttgaagagacacttgcaggagagacataataaccagatatggaacatcattcaagagcac
ttgtacatcgacatctttgacggcatgccccgcagtaagggtcagatcgacagcatgtcc
ggcagtcttgcgggagaggccaaacgagaagtcaataaagccaaggtgttctacgggctg
ctgaaggagccagagattgaagtcccactagatgatgaagatgaagaagcagagaatgag
gaaggaaagcccaagaagaagaaaactaaaaaggacagtatgggctccaagagtaagaaa
caagaccctaatgcccctcaacagaacaggatccctctgccagagctgaaggactcggac
aaactggataagatcatgtacatgaaggagagcaccaaaagaatccggctgagcccggag
aacctgccttctatttgcttctatacgttcctcaatgcctaccagggtttgacggcggta
gacttcactgacgactccagtctgttagcgggaggatttgcagactccacggttcgcgtg
tggagcgtcacacccaaaaaattacgcaaagtcaaatctgcagcagacctgaatctgatt
gataaagagtctgatgacgttctggagaggattatggatgagaagacagccagtgagtct
aaaatcctacacggtcacagcgggccggtgtatggtgtcagcttcagtccagacaggaac
tatctgttgtctagttctgaggacggcacagtcagactgtggagccttcagacgtttaca
tgtcttgtggggtataaaggacacaactatccagtgtgggacactcagttctcaccgttc
ggctattactttgtgtctggaggtcacgacagagtggcacggctctgggcgacggaccat
taccagccattacggatatttgctgggcatctggctgacgtcacatgcacgcgattccac
cccaactcgaactatgtggccacaggctcgaccgaccgcactatacgcctctgggatgtc
ctgaatggaaactgtgtccgcatttttacaggtcacaaggggcccatccattgtcttgca
ttctcacctaatggaaagttcctggcatctggatccacagacgggagagttttactatgg
gatattggacatgggctgatgatcggagaactgaagggccacacagacacaatttatgcc
ctcaagttcagcagagacggagaaatccttgcatcaggctctatggataacacagttcgg
ctgtgggactccatgaaggctttcgatgaggtggagacggacgacttcacggcagcaacg
ggccacatccacctgcctgataactctcaggagctgctgctggggacgtaccatagcaaa
tccacacccgtcacccacctgcacttcaccagacgcaacctgctactggctgcaggagcc
tacaactcccaatga
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integrated database retrieval system
