KEGG   Ctenopharyngodon idella (grass carp): 127508022
Entry
127508022         CDS       T08802                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
cide  Ctenopharyngodon idella (grass carp)
Pathway
cide03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cide00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    127508022
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cide03021]
    127508022
   03036 Chromosome and associated proteins [BR:cide03036]
    127508022
Transcription machinery [BR:cide03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     127508022
   Coactivators
    SAGA/TFTC/STAGA complex
     127508022
Chromosome and associated proteins [BR:cide03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     127508022
    STAGA complex
     127508022
    TFTC complex
     127508022
    SAGA complex
     127508022
    SLIK complex
     127508022
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz WD40_WDHD1_1st TFIID_NTD2 Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st NBCH_WD40 ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_VPS8 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_DCAF12 Tricorn_2nd WD_LRWD1 Beta-prop_Nup120_160 PEP5_VPS11_N eIF2A VPS8_N WD40_like PROPPIN LisH_PAC1 LisH_TPL Beta-prop_ACSF4 Beta-prop_WDR11_2nd
Other DBs
NCBI-GeneID: 127508022
NCBI-ProteinID: XP_051741506
LinkDB
Position
1:complement(39149857..39158210)
AA seq 744 aa
MAAVQDGPMDLDAEKETKPEILSDGTSNLSGNTGSGALSSSPLTAAPAGGAPKLEDQQTL
IAVLQFLKRNKLSESVDILRREAGLAEDLEDPQAADGSGGKDDGDGGDATSLLSRVSIAA
AAAPQSTLTPMPVKSAEDQPDVRVVLSAYSQQGDPSLYQVYYSDLKNFIESVLDCHRAEL
SQLFYPLFVHMYLELVYNNHENEAKAFFEKFSGDQECYYLDDLRVLCGLTKKEHMKGNEA
LLDFRTSRFVLRISRDSYQLLKRHLQERHNNQIWNIIQEHLYIDIFDGMPRSKGQIDSMS
GSLAGEAKREVNKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKTKKDSMGSKSKK
QDPNAPQQNRIPLPELKDSDKLDKIMYMKESTKRIRLSPENLPSICFYTFLNAYQGLTAV
DFTDDSSLLAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDEKTASES
KILHGHSGPVYGVSFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPF
GYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGSTDRTIRLWDV
LNGNCVRIFTGHKGPIHCLAFSPNGKFLASGSTDGRVLLWDIGHGLMIGELKGHTDTIYA
LKFSRDGEILASGSMDNTVRLWDSMKAFDEVETDDFTAATGHIHLPDNSQELLLGTYHSK
STPVTHLHFTRRNLLLAAGAYNSQ
NT seq 2235 nt   +upstreamnt  +downstreamnt
atggcggctgtgcaagatggaccgatggatctggacgcagagaaagagacaaagccagaa
atacttagcgatgggacgtcaaacctctcggggaacactgggagcggggcgctctcctca
tctcccctcaccgctgcccccgccggcggagccccgaagctggaggaccaacaaactttg
atcgcagtgttgcagttcctaaagcggaataaactgtcagagtcggtggatattctgagg
cgggaagccggtcttgcagaagacctggaggacccgcaggctgctgatggcagcggaggg
aaggatgacggagatggaggggatgcaacctctctgctcagccgggtgtctatcgcagca
gcagccgccccccagagcacgctgactcctatgccagtaaagagcgcagaagaccagccg
gatgttcgtgtggtgctgtcagcatacagccagcagggggacccctctctatatcaggta
tattacagcgacctgaagaacttcatagagtcagtgctggactgccaccgagcggagctg
tcccagctcttctaccctctgttcgttcacatgtacctggagctggtctacaacaaccat
gagaacgaagccaaggctttctttgagaagttcagcggtgatcaggagtgttactatctg
gatgacctgcgtgttctctgtggcctcactaagaaagagcacatgaaggggaacgaggcc
ctgctggatttccgcaccagccgttttgtgttgcgcatctccagagactcgtaccagctg
ttgaagagacacttgcaggagagacataataaccagatatggaacatcattcaagagcac
ttgtacatcgacatctttgacggcatgccccgcagtaagggtcagatcgacagcatgtcc
ggcagtcttgcgggagaggccaaacgagaagtcaataaagccaaggtgttctacgggctg
ctgaaggagccagagattgaagtcccactagatgatgaagatgaagaagcagagaatgag
gaaggaaagcccaagaagaagaaaactaaaaaggacagtatgggctccaagagtaagaaa
caagaccctaatgcccctcaacagaacaggatccctctgccagagctgaaggactcggac
aaactggataagatcatgtacatgaaggagagcaccaaaagaatccggctgagcccggag
aacctgccttctatttgcttctatacgttcctcaatgcctaccagggtttgacggcggta
gacttcactgacgactccagtctgttagcgggaggatttgcagactccacggttcgcgtg
tggagcgtcacacccaaaaaattacgcaaagtcaaatctgcagcagacctgaatctgatt
gataaagagtctgatgacgttctggagaggattatggatgagaagacagccagtgagtct
aaaatcctacacggtcacagcgggccggtgtatggtgtcagcttcagtccagacaggaac
tatctgttgtctagttctgaggacggcacagtcagactgtggagccttcagacgtttaca
tgtcttgtggggtataaaggacacaactatccagtgtgggacactcagttctcaccgttc
ggctattactttgtgtctggaggtcacgacagagtggcacggctctgggcgacggaccat
taccagccattacggatatttgctgggcatctggctgacgtcacatgcacgcgattccac
cccaactcgaactatgtggccacaggctcgaccgaccgcactatacgcctctgggatgtc
ctgaatggaaactgtgtccgcatttttacaggtcacaaggggcccatccattgtcttgca
ttctcacctaatggaaagttcctggcatctggatccacagacgggagagttttactatgg
gatattggacatgggctgatgatcggagaactgaagggccacacagacacaatttatgcc
ctcaagttcagcagagacggagaaatccttgcatcaggctctatggataacacagttcgg
ctgtgggactccatgaaggctttcgatgaggtggagacggacgacttcacggcagcaacg
ggccacatccacctgcctgataactctcaggagctgctgctggggacgtaccatagcaaa
tccacacccgtcacccacctgcacttcaccagacgcaacctgctactggctgcaggagcc
tacaactcccaatga

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