KEGG   Ctenopharyngodon idella (grass carp): 127508394
Entry
127508394         CDS       T08802                                 
Name
(RefSeq) protein CASC3 isoform X1
  KO
K14323  protein CASC3
Organism
cide  Ctenopharyngodon idella (grass carp)
Pathway
cide03013  Nucleocytoplasmic transport
cide03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cide00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    127508394
   03015 mRNA surveillance pathway
    127508394
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cide03019]
    127508394
Messenger RNA biogenesis [BR:cide03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     127508394
SSDB
Motif
Pfam: Btz
Other DBs
NCBI-GeneID: 127508394
NCBI-ProteinID: XP_051742221
LinkDB
Position
3:22294561..22314464
AA seq 758 aa
MADRRRRRRRASQDSEEEDESASGSESGRSSSAGRKPRGRDPEPVESPVERVATKRDDES
ECESEDGVGEAVLSDYDSADLEENGSHTEGGEDEEEVEHFSDDEASRPAAEPKPAADAPT
EELGEVEERDEEVKEVKTDEKGNLAGERQSGDGQESTEDPENKSGSKGQKLDDDEDRKNP
AYIPRKGLFFEHDVRGQATEEERPKGRHRKLWKDEGRWEHDKFREEEQAPKSREELIALY
GYDIRNGTGPSDGRSYRSRKPRYAGSPSREPRRHRDGDKPVRTTWQGPPPGHRNASQSVT
LQSGPPPAPPAVPKPSGRPLTQPPQRSFQGSRASSAPHRTEGRGHLKPSLDGPPPRGVRP
QPGEGERGPRLRGRGSHAVHADRSPAVVVEDIRSEEEEEEGEIPTATTTYTAHHYKTERE
RVPSPRKQDPGPAMEGGSAAGQMRESSPPQERTVEKKSYSLARRATRTRTSDLGKQASLD
DSSPAVQQTPAAAKSESWQEHSDAGTQGGLTGLDQDLARLSLAGQNWAQSPPSYLQAEMR
GIRSSMHIAGGPPQYGNMEDMSVGGGRAKRYSSQRQRPVPEPAPMHIGVMEGHYYEPMSF
QGPIYTHGESPAALPPQGMLVQPEMHLPHPTHPGHPGLHPHQSGGPMPNPALYAAPPVSL
SPGQPPPQQLLPPPFYPPPGVMTFGNTNYPYPAGATLPPMYPNPQAQSQVYGGVTYYDTV
QQQAQPKRSPPRRSSHPVTVRPPPPEDQSRNPAEEIRS
NT seq 2277 nt   +upstreamnt  +downstreamnt
atggcggaccggcggcgacggagacggcgcgcctctcaggacagcgaggaggaggacgag
tccgcctcgggctccgagagcgggagatcctcctcggccggccggaagcctcgcggaaga
gatcccgagccggtcgaatcaccagtggagcgcgtcgccaccaaaagagacgatgagtcg
gagtgtgaaagtgaagatggtgttggtgaagcagtgctatcagactatgacagcgctgat
ctggaggagaatggatcgcacacagagggaggagaggatgaggaggaagtagagcatttc
agtgatgacgaggcctcacgtcctgcagcagaaccgaagcccgctgcagatgccccgaca
gaagagcttggtgaagtggaggagagagatgaagaagtcaaggaggttaaaacagatgag
aaggggaatctagccggggagcgacagagtggagatggacaggagagcacagaggaccct
gagaataaatcgggaagtaaaggccagaagctggatgatgatgaggacaggaagaatcca
gcatacatcccccgaaaaggccttttctttgagcatgacgtgagaggccaggctacagag
gaggagaggcctaaaggcagacacaggaagttgtggaaggacgagggccgatgggaacac
gacaagttccgtgaagaggagcaggcgccaaagtcccgcgaagagcttattgctctttac
ggttatgacatccgcaacggcacagggccgagtgacggacgatcgtaccgctcccgaaaa
cccagatatgctggttcacccagtcgggagcctaggcgccaccgtgacggagataagcct
gtgcgtacaacatggcaggggcctccacctggccaccgcaatgcctctcagtctgttacc
ctacagtcaggacctcctcctgctccccctgcagtacccaaaccctccgggcgacccttg
actcaacctccacagcgcagcttccagggcagtcgagcctcgtcggccccccacaggaca
gaaggtcgagggcacctgaagcccagtctagatggcccgccacctcgaggtgtgcggcca
cagcctggggaaggtgaaaggggcccaaggctcaggggccgtggctctcatgctgttcat
gctgaccgtagcccagctgtggtggtggaggacatccgcagcgaggaagaagaggaagag
ggtgagattccaacagccacgactacatacactgctcaccactacaagacggagagagaa
cgggttccgtcaccacgaaagcaagatccgggcccagcgatggaagggggcagtgcagct
ggtcagatgagagaatcatctccgcctcaagagaggacggtggagaagaaatcgtactcg
cttgcgcggagggcgactcgaacgcgaacgtctgatctcggtaagcaggcgtcgttagat
gactcttcgcctgcagtccagcaaaccccagcggcagcaaagagcgagtcatggcaagag
catagtgatgcaggaacacaaggaggactaacagggctcgaccaggacctggcccgcctc
agtctggcggggcaaaactgggcccagagcccaccctcctacctgcaggctgagatgaga
ggcatccgtagttccatgcacatagcaggaggccctccacagtatggaaacatggaggat
atgagtgttggtggtggccgagctaagcggtattcatcacagcgccagaggccagttcct
gagcctgcgcccatgcacataggagtcatggagggccattattatgaacccatgtctttc
cagggaccaatctacacgcatggggaaagtccagcagccttgccccctcagggcatgctt
gttcaacctgagatgcacctgccacaccccacccaccccggacacccaggcttgcatccg
caccagtcaggagggcccatgcccaatcctgctctttacgccgctccacccgtttctttg
tcacctgggcaaccgcctccacagcagctgctacccccacccttctaccctccaccaggt
gtcatgacctttgggaacaccaactacccgtacccagctggagctacgctacctccaatg
taccccaacccccaggcacagtcacaggtctacggtggtgtgacgtactacgacacggta
cagcagcaagctcaacccaaacgctccccgccccgacgttcctctcatcccgttacagtc
agacctccccctcctgaggaccagagcagaaaccccgctgaggaaattcgctcctag

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