Ctenopharyngodon idella (grass carp): 127508394
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Entry
127508394 CDS
T08802
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03013
Nucleocytoplasmic transport
cide03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127508394
03015 mRNA surveillance pathway
127508394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127508394
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127508394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
127508394
NCBI-ProteinID:
XP_051742221
LinkDB
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Position
3:22294561..22314464
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AA seq
758 aa
AA seq
DB search
MADRRRRRRRASQDSEEEDESASGSESGRSSSAGRKPRGRDPEPVESPVERVATKRDDES
ECESEDGVGEAVLSDYDSADLEENGSHTEGGEDEEEVEHFSDDEASRPAAEPKPAADAPT
EELGEVEERDEEVKEVKTDEKGNLAGERQSGDGQESTEDPENKSGSKGQKLDDDEDRKNP
AYIPRKGLFFEHDVRGQATEEERPKGRHRKLWKDEGRWEHDKFREEEQAPKSREELIALY
GYDIRNGTGPSDGRSYRSRKPRYAGSPSREPRRHRDGDKPVRTTWQGPPPGHRNASQSVT
LQSGPPPAPPAVPKPSGRPLTQPPQRSFQGSRASSAPHRTEGRGHLKPSLDGPPPRGVRP
QPGEGERGPRLRGRGSHAVHADRSPAVVVEDIRSEEEEEEGEIPTATTTYTAHHYKTERE
RVPSPRKQDPGPAMEGGSAAGQMRESSPPQERTVEKKSYSLARRATRTRTSDLGKQASLD
DSSPAVQQTPAAAKSESWQEHSDAGTQGGLTGLDQDLARLSLAGQNWAQSPPSYLQAEMR
GIRSSMHIAGGPPQYGNMEDMSVGGGRAKRYSSQRQRPVPEPAPMHIGVMEGHYYEPMSF
QGPIYTHGESPAALPPQGMLVQPEMHLPHPTHPGHPGLHPHQSGGPMPNPALYAAPPVSL
SPGQPPPQQLLPPPFYPPPGVMTFGNTNYPYPAGATLPPMYPNPQAQSQVYGGVTYYDTV
QQQAQPKRSPPRRSSHPVTVRPPPPEDQSRNPAEEIRS
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgacggagacggcgcgcctctcaggacagcgaggaggaggacgag
tccgcctcgggctccgagagcgggagatcctcctcggccggccggaagcctcgcggaaga
gatcccgagccggtcgaatcaccagtggagcgcgtcgccaccaaaagagacgatgagtcg
gagtgtgaaagtgaagatggtgttggtgaagcagtgctatcagactatgacagcgctgat
ctggaggagaatggatcgcacacagagggaggagaggatgaggaggaagtagagcatttc
agtgatgacgaggcctcacgtcctgcagcagaaccgaagcccgctgcagatgccccgaca
gaagagcttggtgaagtggaggagagagatgaagaagtcaaggaggttaaaacagatgag
aaggggaatctagccggggagcgacagagtggagatggacaggagagcacagaggaccct
gagaataaatcgggaagtaaaggccagaagctggatgatgatgaggacaggaagaatcca
gcatacatcccccgaaaaggccttttctttgagcatgacgtgagaggccaggctacagag
gaggagaggcctaaaggcagacacaggaagttgtggaaggacgagggccgatgggaacac
gacaagttccgtgaagaggagcaggcgccaaagtcccgcgaagagcttattgctctttac
ggttatgacatccgcaacggcacagggccgagtgacggacgatcgtaccgctcccgaaaa
cccagatatgctggttcacccagtcgggagcctaggcgccaccgtgacggagataagcct
gtgcgtacaacatggcaggggcctccacctggccaccgcaatgcctctcagtctgttacc
ctacagtcaggacctcctcctgctccccctgcagtacccaaaccctccgggcgacccttg
actcaacctccacagcgcagcttccagggcagtcgagcctcgtcggccccccacaggaca
gaaggtcgagggcacctgaagcccagtctagatggcccgccacctcgaggtgtgcggcca
cagcctggggaaggtgaaaggggcccaaggctcaggggccgtggctctcatgctgttcat
gctgaccgtagcccagctgtggtggtggaggacatccgcagcgaggaagaagaggaagag
ggtgagattccaacagccacgactacatacactgctcaccactacaagacggagagagaa
cgggttccgtcaccacgaaagcaagatccgggcccagcgatggaagggggcagtgcagct
ggtcagatgagagaatcatctccgcctcaagagaggacggtggagaagaaatcgtactcg
cttgcgcggagggcgactcgaacgcgaacgtctgatctcggtaagcaggcgtcgttagat
gactcttcgcctgcagtccagcaaaccccagcggcagcaaagagcgagtcatggcaagag
catagtgatgcaggaacacaaggaggactaacagggctcgaccaggacctggcccgcctc
agtctggcggggcaaaactgggcccagagcccaccctcctacctgcaggctgagatgaga
ggcatccgtagttccatgcacatagcaggaggccctccacagtatggaaacatggaggat
atgagtgttggtggtggccgagctaagcggtattcatcacagcgccagaggccagttcct
gagcctgcgcccatgcacataggagtcatggagggccattattatgaacccatgtctttc
cagggaccaatctacacgcatggggaaagtccagcagccttgccccctcagggcatgctt
gttcaacctgagatgcacctgccacaccccacccaccccggacacccaggcttgcatccg
caccagtcaggagggcccatgcccaatcctgctctttacgccgctccacccgtttctttg
tcacctgggcaaccgcctccacagcagctgctacccccacccttctaccctccaccaggt
gtcatgacctttgggaacaccaactacccgtacccagctggagctacgctacctccaatg
taccccaacccccaggcacagtcacaggtctacggtggtgtgacgtactacgacacggta
cagcagcaagctcaacccaaacgctccccgccccgacgttcctctcatcccgttacagtc
agacctccccctcctgaggaccagagcagaaaccccgctgaggaaattcgctcctag
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