Ctenopharyngodon idella (grass carp): 127508839
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Entry
127508839 CDS
T08802
Name
(RefSeq) POU domain, class 2, transcription factor 1a isoform X1
KO
K09364
POU domain transcription factor, class 2
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127508839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cide03000
]
127508839
03021 Transcription machinery [BR:
cide03021
]
127508839
Transcription factors [BR:
cide03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
127508839
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
127508839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pou
POU2F1_C
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
127508839
NCBI-ProteinID:
XP_051743239
LinkDB
All DBs
Position
1:4669120..4683870
Genome browser
AA seq
635 aa
AA seq
DB search
MADRGSTTQDERSTADSSSCPADLSKSTMENRAQGLQAAQANGLDAHKPNGQATSAISNA
QAQALLQQLSLTPAQLLLQQTQAQLIAAVQQSAGQQSSTTGANISASAATPITLSQPIQI
ASQLQPQGLNLQQFVLVQPGHSISPQIQPQFIISPSPQGQTGLLQAQNILTQLPQSQASL
LPAQTSIALTTQAATPTRKIAAMPSPAAPTPKRVDGPCVEEASDLEELEQFAKNFKQRRI
KLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENMSADC
VVSSASEMSPGLCESLNRRRKKRTSIETTIRLALERSFLEQSQKPSSEEITVIADQLNME
KEVVRVWFCNRRQKEKRINPPSSCSGSSASAIKAIYSTSNTAVSSGTNTLTVNSVVPLSA
SSISNLTLGGALAQVTSHTPSVISMAPAIATPAPTVTSPSLTTSVTAVKQELSAVSSATT
VTQGAGQLLVTGTGLGGANLTAVTGGLNPTIITPSQLTQGGTLLSLTPALGNTLMNNNTL
ATIQAALASGGALPLTSIDGNTGLLFANTSAGNPASGLMTTPFFLNPSGFSLLPANLLSA
GGAGGGALNLHVTSDVQQSPVATTTKNVALASKAQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagaggatcaacgactcaagatgagcgctcgactgcagattctagcagctgt
ccagcagatctgagtaaaagcaccatggagaacagagcgcaaggacttcaagcagctcag
gccaacggtctggacgcacacaaaccaaatggacaagcaacaagtgcaatcagcaacgct
caggcgcaggcgctgctccagcagttgagtttgactccagcgcagctgttgctgcagcag
acgcaggcgcagctcatcgcagccgtgcagcagtcggcaggtcaacagagcagcaccact
ggagccaatatctccgcctccgcggccacgcccatcactctgtcccagcccatccagatc
gcatctcagctgcagccacagggtttgaacctgcagcagttcgtgttggttcagccgggt
cactccatcagccctcagattcagccccagttcatcatctctccgtctcctcagggtcag
accggtctcttgcaagctcagaatatcctgactcaactacctcaaagccaagccagcctc
ctgcccgctcagaccagcatcgctctcaccacacaggcggccacaccgacgaggaagatc
gcggccatgccgtctcccgcggctcccactccgaagcgcgtggacggcccgtgtgtggag
gaggccagcgacctggaggagctcgagcagttcgcaaagaacttcaagcagagacgcatc
aagctgggcttcactcagggtgacgtggggttagcgatggggaaactctacggcaacgac
ttcagccagaccaccatctccagattcgaggccttgaacctgagcttcaagaacatgtgc
aaactcaaaccactgctggagaaatggctcaacgacgcagagaacatgtcagctgactgt
gtggtgtcgagtgcgagcgagatgtctccgggtctctgcgagagtctgaaccggcggcgt
aagaagcggaccagcatcgagaccaccatccgtctggcattagagaggagcttcctggag
cagagtcagaagccgtcatcggaggagatcacagtgattgcggatcagctcaacatggag
aaggaggtggtgcgagtttggttctgtaaccgcagacagaaggagaagaggatcaatcct
cccagcagctgcagcggatcgtccgcgtcagccatcaaagccatctacagcacctccaac
actgcagtgtccagcggcacaaacacactgacggtgaattctgtagttccactgagcgcc
agcagcatctcaaacctcacgctcggtggcgctctggctcaggtgacgtcacacactccg
tcggtcatctccatggcaccagccatcgctacgcccgcccccactgtgacatcaccatca
ctgaccacgtccgttactgctgtgaaacaagagttgagcgcagtttcctcggcaaccacg
gtcacgcagggggcggggcagttgctggtgacgggcacaggactgggcggagctaatctg
actgctgttactgggggtttgaacccaacgatcataacgccctcgcagctgacgcaaggt
gggacgctgctgagtttgactcctgctctgggaaacacgttgatgaacaacaacacactg
gccaccatccaggcagctcttgcgtcgggcggcgctctgcctctgacgtccatcgacgga
aacaccggcctgctgttcgccaacaccagcgcaggaaaccccgcctccggcctgatgacc
acgcccttcttcctcaacccgtccggcttctctctgctgcccgccaatctcctgtcagcg
ggcggggctggaggcggagctctcaacctgcatgtgaccagcgatgtgcagcagagtcct
gttgccacgacgacgaagaacgtggccttggcctcgaaggctcagtga
DBGET
integrated database retrieval system
