Ctenopharyngodon idella (grass carp): 127509112 Help Entry 127509112         CDS       T08802                                  Name (RefSeq) collagen, type I, alpha 1a   KO K06236   collagen type I alpha Organism cide  Ctenopharyngodon idella (grass carp) Pathway cide04510   Focal adhesion cide04512   ECM-receptor interaction cide04518   Integrin signaling cide04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cide00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     127509112    04518 Integrin signaling     127509112  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     127509112   09142 Cell motility    04820 Cytoskeleton in muscle cells     127509112  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:cide00536]     127509112 Glycosaminoglycan binding proteins [BR:cide00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    127509112 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd TILa Motif Other DBs NCBI-GeneID:  127509112 NCBI-ProteinID:  XP_051743565 LinkDB All DBs Position 3:complement(22437091..22454502) Genome browser AA seq 1448 aa AA seqDB search MFSFVDIRLALLLSATVLLARGQGEDDRTGGSCTLDGQVYNDRDVWKPEPCQICVCDSGT VMCDEVICEDTTDCPNPVIPHDECCPVCPDDDFQEPSVEGPRGTPGEKGDRGPAGPPGND GIPGQPGLPGPPGPPGPPGLGGNFSPQMSGGFDEKSGGAMAVPGPMGPMGPRGPPGPPGT PGPQGFTGPPGEPGEAGAPGPMGPRGAAGPPGKNGEDGESGKPGRPGERGPPGPQGARGF PGTPGLPGIKGHRGFSGLDGAKGDTGPSGPKGEAGAPGENGTPGAMGPRGLPGERGRAGP PGAAGARGNDGAAGAAGPPGPTGPAGPPGFPGGPGAKGEVGPQGARGAEGPQGARGEAGN PGPAGPAGPAGNNGADGAAGPKGSPGTPGIAGAPGFPGPRGPPGPSGAAGAPGPKGNTGE VGAPGAKGEAGAKGEAGAQGVQGPPGPPGEEGKRGARGEPGAAGGRGPPGERGAPGARGF PGADGSAGPKGAPGERGGPGVVGPKGATGEPGRNGEPGMPGSKGMTGSPGSPGPDGKTGP SGTPGQDGRPGPPGPVGARGQPGVMGFPGPKGAAGEAGKPGERGVMGAVGATGAPGKDGD VGAPGAPGPAGPAGERGEQGPAGPPGFQGLPGPQGATGEPGKSGEQGVPGEAGAPGPAGS RGDRGFPGERGAPGPAGPAGARGSPGSAGNDGAKGDAGAPGAPGAQGPPGLQGMPGERGA AGLPGLKGDRGDQGAKGTDGAPGKDGIRGMTGPIGPPGPAGAPGDKGETGAPGLVGPTGA RGPPGERGETGAPGPAGFAGPPGADGLPGAKGEAGDNGAKGDAGSPGPAGATGAPGPQGP VGATGPKGARGAAGPPGATGFPGAAGRVGPPGPAGNAGPPGPPGPGGKEGQKGNRGETGP AGRTGEVGAPGPPGAPGEKGTPGAEGPTGPAGIPGPQGIAGQRGIVGLPGQRGERGFPGL PGPSGEPGKQGPSGPSGERGPPGPMGPPGLAGPPGEPGREGTPGNEGSAGRDGAPGPKGD RGETGAAGTPGAPGPPGAPGPVGPAGKTGDRGESGPAGPAGAAGPAGPRGPAGPAGARGD KGETGEAGERGMKGHRGFTGMQGPPGPPGPSGEPGPAGASGPAGPRGPAGSSGPAGKDGM SGLPGPIGPPGPRGRNGEIGPAGPPGAPGPPGPPGPSGGGFDIGFIAQPQEKAPDPFRHF RADDANVMRDRDLEVDTTLKSLSQQIESIMSPDGTKKNPARTCRDLKMCHPDWKSGEYWI DPDQGCNQDAIKVYCNMETGETCVYPTESTIPKKNWYTSKNIKEKKHVWFGEAMTDGFQF EYGSEGSKAEDVNIQLTFLRLMSTEASQNITYHCKNSIAYMDQASGNLKKALLLQGSNEI EIRAEGNSRFTYSVTEDGCTSHTGAWGKTVIDYKTTKTSRLPIIDIAPMDVGAPNQEFGI EVGPVCFL NT seq 4347 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggatattcggttggcgctgttactcagcgcaacggtgcttttggca agaggacaaggcgaggatgatcgcacaggtggcagctgcacattggacggccaggtctac aatgacagggacgtctggaaaccagagccatgccaaatctgcgtgtgcgacagcggcacc gttatgtgcgacgaggtgatctgcgaggacacaaccgactgccccaacccagtgattccc cacgacgagtgctgccccgtctgcccagacgacgatttccaggaacccagtgttgaggga cctagaggtactcccggtgagaagggtgacaggggtcctgccggccctcccggcaatgat ggtatccctggacagcctggccttcctgggcccccaggcccccctggacctcctggcctt ggtggaaacttttctcctcagatgtctggtggcttcgatgagaaatccggcggagcaatg gccgtcccaggccccatgggacctatgggcccccgtggaccccctgggcctcctggaact cctggaccccaaggttttactggtccccctggtgagcctggtgaggctggtgctcctggt ccaatgggtccccgtggtgctgctggtccccctggaaagaacggagaggatggtgagtct ggcaaacccggtcgccctggtgagcgcggaccccctggcccacagggtgctcgtggattc cccggaacccctggacttccaggcatcaagggacacagaggattcagcggtctagatgga gctaagggagatactggcccttctggtcctaagggtgaggctggtgcccctggtgagaac ggaactcctggtgctatgggtcctcgtggtctgcctggcgagagaggccgtgctggtcct cctggcgctgctggtgctcgtggtaatgatggtgccgctggagctgctggtcctcctggc ccaactggccctgctggtcccccaggattccctggtggccctggagctaagggagaggtt ggtcctcagggagctcgtggtgcagagggaccccagggagcccgtggtgaggctggtaac cctggacctgctggtcctgctggtcccgctggtaacaacggagctgatggtgctgctggt cccaagggttctcctggcactcctggtattgctggtgctcctggtttccctggacctcgt ggtcctcccggaccttctggagctgctggtgcccctggccctaagggtaacaccggtgag gtcggtgcccctggtgccaaaggagaggctggtgccaagggagaggctggtgcccaagga gttcagggtccccctggcccacctggtgaggaaggcaaaagaggagcccgtggtgagccc ggtgctgcaggtggccgtggacctcctggtgaacgtggtgctcctggtgctcgtggtttc cctggtgctgatggatctgcaggtcctaagggtgcccctggtgagcgtggaggccctgga gttgttggacctaagggtgccactggtgagcctggccgcaatggtgaacctggtatgcca ggatccaagggtatgactggtagccctggcagccctggacctgatggaaagaccggacca tctggtactcctggacaagatggccgccctggaccacctggccccgttggagccagagga cagcctggtgtcatgggattccctggacctaagggtgctgctggtgaagctggcaaacct ggtgagagaggtgtgatgggtgctgttggtgctactggcgctcctggtaaggacggtgat gttggtgcccctggtgctcctggacctgctgggcctgctggtgagagaggtgaacaggga cctgctggtcctcccggattccagggtctgccaggacctcagggtgctaccggtgagcct ggcaagtctggtgagcagggtgttcctggagaggctggagctcctggacctgctggatcc agaggtgacagaggattccctggtgagcgtggtgcccctggccctgctggtcctgctggc gctcgtggttctcctggttcagctggtaatgatggtgccaagggtgatgctggtgcccca ggtgcccctggcgctcagggtcctcccggacttcaaggaatgcctggcgagcgtggtgct gctggtctgccaggtcttaagggtgacagaggtgaccaaggtgccaagggtactgatggt gcccctggtaaagatggcatccgtggtatgaccggaccaattggacctcctggacctgct ggagctcctggtgacaagggagagactggtgctcctggacttgttggacctactggtgcc cgtggaccacctggtgagcgcggagagactggtgctccaggacctgctggatttgctgga cctcctggtgctgacggtctgcctggtgctaagggagaggctggagacaatggtgctaag ggtgatgctggttctccaggacctgcaggagcaactggtgcccccggacctcagggtcct gttggtgctactggacccaagggtgcccgtggtgctgctggtccccctggtgctactggc ttccctggtgctgctggcagagttggacctcccggccctgctggaaacgctggaccccca ggacctcctggacctggtggtaaggagggccagaaaggtaaccgtggtgagactggacct gctggccgcactggtgaagttggtgctcctggaccacctggtgcccctggtgagaaagga actcccggagctgagggtcccactggccctgctggtatacctggacctcaaggtattgct ggtcagcgtggtattgttggtctccctggacaaagaggcgagcgtggtttccctggtctc cctggcccatctggagagcctggcaaacaggggccttctggaccctctggtgaacgtgga cctcctggacccatgggaccccctggactggctggacctcctggcgagcctggtcgtgag ggtaccccaggtaatgagggttctgctggtcgtgatggtgctcctggccccaagggagac cgtggtgagactggcgctgctggcactcccggtgctcctggacctcctggtgctcctgga cccgttggccctgctggaaagactggtgatcgtggagagtctggccctgctggtcctgcc ggtgctgctggccctgctggtccccgtggacctgctggacccgctggagctcgtggagac aagggtgagactggcgaggctggtgagagaggcatgaagggacacagaggatttactgga atgcagggacccccaggacctcctggaccctctggagagcctggacctgctggagcttct ggacccgctggacctagaggccctgctggatcttctggacctgctggtaaggatggtatg agcggacttcctggacccattggacctcctggaccccgtggtcgcaatggagaaattgga ccagctggacctcctggagctcccggaccccctggacctcccggaccctctggtggtgga tttgacatcggcttcattgcccagccacaggagaaggcccctgatcccttccgccacttc cgtgccgacgatgccaatgtgatgcgcgaccgtgacctggaggttgacaccaccctcaag tccctgagccagcagattgagagcatcatgagcccagatggtaccaagaagaaccctgct cgcacttgccgtgacctgaagatgtgccacccagactggaagagcggtgagtactggatt gaccctgaccagggctgcaaccaggatgccatcaaggtctactgcaacatggaaactggc gagacctgtgtctacccaactgagtccaccattcccaagaagaactggtacacaagcaag aacatcaaggagaagaagcacgtctggttcggagaggccatgaccgatggcttccagttc gagtatggcagcgagggctccaaggctgaggatgtcaacattcagctcaccttcctgcgc ctcatgtccactgaggcctcccagaacattacataccactgcaagaacagcattgcatac atggaccaggcttctggcaacctgaagaaggctcttctgctgcagggctccaacgagatt gagatcagagcagagggcaacagccgcttcacatacagtgtcactgaggatggatgcacg tcgcataccggtgcatggggcaagacagtcattgactacaaaacaacgaaaacatcccgt ctgcctattattgacatcgcccctatggacgttggtgcacctaatcaggaatttggcatt gaagttggcccagtctgcttcttgtaa

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