Ctenopharyngodon idella (grass carp): 127509854
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Entry
127509854 CDS
T08802
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127509854
03036 Chromosome and associated proteins [BR:
cide03036
]
127509854
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127509854
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127509854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
127509854
NCBI-ProteinID:
XP_051744959
LinkDB
All DBs
Position
3:8566601..8584877
Genome browser
AA seq
1579 aa
AA seq
DB search
MEDGHHKTGDSSQQEDTEDSTKELSAFPSAASLNTLTCASLRPGPTETPSPCPVVGGSLD
PPEGGNNAKRTAVADGQPPSAVSQRYMPREVPPRFRNQQEPKVLLKRGQPPLSCMLLGGG
NGGDATPRLPLQEEADASDHTVDSVSLHSSSDASATPTYANYTWGLGSGGQPSAQGMDKD
NSDVEKWPRPEDHWNSNQTPQSARLGMDESAGLGMNSSSQLSGYAETSAVGGASSQSDNK
ESIKGVNQHFSSKVPLPSGDQEGTQGLNPNYNPDDPERAASGRDLLTHPASKESPLAPLS
PASARYQTLCKNEERITGDWAELQAGPNGGGEVGVSCPDLWDTGQDLVGKNSDAVGGSSG
DGTGISQGKWDGDTVGSNKQAATGWTSNSTVGASKEDVKEISEVSTDSLQDSSMLAKSVA
SRDDNQKAGDDWDGSEGESTGRESTEDGMHAHNLVQSPSRCQALHPEEALQSLITHTNLD
PKVLCNTGWGKTQIKQNVAWDFEGDSGNAGWDVEVHTNRSKEGWRDAGDPSSSKIQKQEV
GQVGRAQGWTGQGEISVGSGRKGSGWGEDQEVEGSCRREGTGWNQGGGSEWTKLPEGGGW
KEERGSDRRNQDEGSPEESGQRSGGWGGNEGSSVKLHQGWSEKLLPSHIPNKQTALKTQN
QQPQQQSQTQQQMPGYPKALQDRGRPEEPDDQSKGSGWTSGPIPQMPSVVEPSGWDEPSP
QSISRKMEIDDGTSAWGDPSRYNNKNVNLWDKNSSPAQQSSSGRQPGTASKNSVPATWAR
SSAPSDPSVDSGTASWGKSFDAPSGWGESSEPGKGGGWGNSHSHSAKSGSKSMQESWGDE
SSNASRHSSWEEDDGSVGVWGSRGSQSNMPTYNSGGWGQGQGARRLNTKSPLKGNSGDSW
ASPVTRQFSNMGVTDEDSSMGHDRHDRRGMNDGEMRRGGRTGGGFRSQTSKEMPCGETGP
YLDKVGGHNMFGSGGHPPLRGMHQAGVHPLNPSPGIRAQVPPQFLPPQVPGPLLKPMAPP
SGSMFPPQLSPQQIAMLGGIHPHMQQFQLACQLILQQQQQQQFLNQRKFPPPARQQHDPQ
QLARIMAILQQQQGVGGPKLSPSPLGGHVPKHPDAHLHHLGINAHKQPDVPVHSAMGGSE
LHNKAPAAFTGFASGSDLDSLMSSPAGLKDGAGTQSRFKWMMDGNSLTPSPPEQTLHNGP
VKLPGGGSFSQFDVLGGGWHRSAAGKMDTPPANPTWPPEFQPGVPWKGVQSPEPEPDPYM
TPAGMMGSAVLGDTEHHLLQDNTGSHSLNTCMPSPGAWPYSASETPLTAHGTAKYSELKS
SWPPEPIGHGKSWRTNRNTSHLPRPPPGLSSQKQPWLGEGPRMPRAWGGGASVPESPFKS
EWSDGGASAGKSWLLLRNLTPQIDGSTLRTICLQHGPLLTFHLGLTQGSALIRYCSPHEA
AKAQSALHMCVLGNTTIVAEFMSEEDVVRYFTHSQTAGVTGSPEGSSDSASRESERPAGV
GADGDWQGLDVSAGSAVETPGLALLSQWSNSAGEGAGKGVWGGVAPGYHGGGLWGVPQLE
DGTAGLLPGNLLGGGTDSL
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atggaagacggtcaccataagacaggagacagtagtcaacaggaggacactgaagacagc
acaaaagaattgagtgcatttccatctgccgcatctctcaacacccttacctgtgcttca
ttacgacccggtcccaccgaaacaccctccccctgtcctgttgtcgggggttcgttggac
ccccctgagggagggaacaatgcaaagcggaccgctgtggccgacggacagcccccctcc
gcggtgtcccagcgctacatgccccgtgaggtgcccccgcgcttccgcaaccagcaggaa
cccaaagtgctactgaagaggggccagccgccactgtcctgcatgctgctggggggcgga
aacgggggggacgcaacgccccgacttcccctgcaggaggaagctgatgcctcagatcat
acggtggattcagtttctctgcactcatcgtctgacgcctctgccactcccacttatgca
aattacacatgggggctgggctcaggaggtcaaccctccgctcagggaatggacaaggac
aattctgatgtagagaaatggccaagaccggaagaccattggaatagtaatcagacccca
cagtctgcaaggttagggatggatgagtctgccggcctgggaatgaatagttcttctcaa
ctctctggatatgcagaaaccagtgcggtaggaggtgcatcctcacagtctgacaataaa
gaatcaattaaaggagtcaatcaacattttagttccaaggtgccgttaccttctggagac
caggagggcactcaaggtctaaatccaaactacaaccctgatgaccctgagagagcagct
tcaggtcgagatctcttaactcaccctgcctctaaggaatctcctcttgcacccttgagt
ccagccagtgcgaggtaccagacactctgcaagaatgaagaacgcattacgggggattgg
gcggagctgcaagctggaccaaatggtggtggagaggttggagtctcctgcccagatttg
tgggatacaggacaagatcttgttgggaagaacagtgatgctgtaggtggaagttcaggt
gatggcactggcatctctcagggaaagtgggacggcgacacagtaggttcaaacaaacag
gcagctacaggatggacctcaaactcaacagttggagcctcaaaagaggatgtgaaagag
atctctgaggtaagcacagatagtttacaggactcttcaatgcttgcaaaaagtgtggca
tcaagagatgacaatcagaaagcaggagacgactgggatgggtcagagggagaatcgact
ggtagagaaagcactgaggatgggatgcacgcccacaatctggtccagagtccctccaga
tgtcaggccctccacccagaagaagccttacagagcttgatcactcacactaacctggat
cctaaagtgctgtgcaacacgggatggggcaaaacccagatcaagcagaacgttgcctgg
gattttgagggcgatagtgggaacgctggttgggatgtagaagtgcataccaaccgcagt
aaggaaggctggcgggatgcaggtgatccttccagctccaaaattcagaagcaagaggtt
ggacaggtgggtagagctcaagggtggaccgggcaaggagaaataagtgttgggagtggt
cgcaaagggagtggttggggagaagaccaggaggttgaaggttcgtgtaggagggaagga
actgggtggaaccagggtggcggaagtgagtggacaaaattgcccgagggtggaggctgg
aaggaagagagaggtagtgacagaagaaatcaggatgagggcagcccggaagagtcggga
cagcggagtggtggctggggaggaaatgaaggcagcagtgtcaaactgcaccagggatgg
agcgagaagcttcttccatcacacataccaaacaaacaaacagcacttaaaacccaaaat
caacaaccgcagcagcaatcgcagacccagcagcaaatgccgggatatccaaaggccttg
caggacagggggcgtccagaagagccggatgaccagagcaaagggtctgggtggacctct
gggcccatccctcagatgccttcagttgtagagccgagtgggtgggatgaaccctcgcct
cagtccatcagccggaagatggagatcgacgatggcacgtctgcatggggcgatccgtca
cgctacaacaacaagaacgtcaatctgtgggataagaacagctcaccggcccaacagtca
tcgtctggaagacagcctggaacggcttctaagaactcggttcctgcaacatgggcgcgc
agcagtgctccctctgacccatctgtggacagtggtacagcttcttgggggaaatcgttt
gatgcaccatctggctggggggaatcgagtgaaccagggaaaggtggaggatggggaaac
tcccattcccattctgccaagtctggttcaaagtctatgcaagagagttggggtgacgaa
agctcgaatgcatcccgccactccagctgggaggaagatgatggtagtgttggtgtttgg
ggaagtcggggatcccaaagcaacatgcccacgtacaactccgggggctgggggcaaggc
cagggggccaggagactcaacactaagagcccccttaaaggtaacagtggggactcgtgg
gcatctcctgtgactcggcagttctcaaacatgggcgttacggatgaagactccagtatg
ggtcatgatagacatgacaggagaggaatgaatgatggtgagatgcggagaggcggcagg
actgggggaggtttccgctcacagacttccaaagagatgccatgtggggagaccggacct
tatctggacaaggtcgggggtcataatatgtttggcagcggtggacatcctccattgaga
gggatgcatcaggctggtgtgcaccccttaaacccttcccccgggatacgagcacaagtg
cctccccagttcctgccacctcaggttcctgggcctttgctaaagccaatggcgccccct
agtgggagtatgttccctccacagctctccccccagcaaatcgccatgcttggtggcatt
catccacacatgcagcagttccaactagcctgtcagctcattctacaacaacaacagcag
caacagtttctgaatcagaggaagtttcctcctcctgcaagacaacagcacgacccgcag
cagctggcgcggatcatggctatcctacagcagcaacagggggttggcgggcccaaactc
tcgccgtcccccctgggaggacacgtgcccaaacacccagacgcgcaccttcatcacctg
ggcataaacgctcacaagcagcctgatgtgccagtgcattcggccatgggaggatctgag
ctacacaacaaagctccagctgcgttcacgggttttgcgagcggatctgatctggactct
ctgatgagttctcctgctggtttgaaggatggagctgggactcagtctcgatttaagtgg
atgatggatggaaacagtttgacgccctccccgccggagcaaacactacacaacgggcca
gtgaagctgcccggcggtggctcattctctcagtttgacgtgttgggcggcggctggcac
agaagtgcagctggtaaaatggacacacctcctgcaaaccccacctggcctccagagttt
cagccgggcgtcccgtggaagggcgtccagagccccgaacctgagcctgacccttacatg
acccctgcgggaatgatgggatcagctgtgctcggtgataccgaacatcatctgctgcaa
gacaacacagggtcacactctctgaacacctgtatgccttcacctggtgcctggccgtac
agtgcctcagaaacccctctcactgcacacggcacagctaaatactctgagctgaagtcc
agttggccaccggagcccattggacatggcaaatcgtggcggaccaatcggaacacttct
cacctgccccgtcctcctccgggcctcagcagtcagaagcagccgtggttgggggagggg
cctcggatgcccagggcatggggaggcggagccagcgtcccggagtcgccctttaaatca
gagtggagcgacggaggagcgtcggcgggaaaatcatggctgttactgcggaacctcacg
ccacagatcgacggctcgaccctgaggacgatctgtctgcagcacggccctctgctgacc
tttcatctcggcttgacgcagggcagcgctctgattcgctactgtagccctcatgaagcc
gccaaagcccagagcgccctgcatatgtgcgttctgggaaacaccaccatcgtggccgag
ttcatgagcgaggaggacgtcgtccgttacttcacacattcccagaccgccggggtcaca
gggtcacccgagggctcgtccgactctgcctctcgagagagcgagcggcccgcgggcgtt
ggcgctgacggagactggcaggggttggacgtgtcggccggatctgctgtggaaacgccc
ggactcgccctcctcagccaatggagcaacagtgcaggggagggggcggggaaaggggtc
tgggggggcgtggctcccggttatcacggcggcggcctatggggcgttcctcagttagag
gacggcacagccgggttattgccaggcaacctgcttggaggcgggacggacagtttgtga
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integrated database retrieval system
