Ctenopharyngodon idella (grass carp): 127510115
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Entry
127510115 CDS
T08802
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127510115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127510115
03041 Spliceosome [BR:
cide03041
]
127510115
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127510115
Spliceosome [BR:
cide03041
]
Complex B
Other components
Prp19-related factors
127510115
Complex C
127510115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_19
TPR_12
TPR_8
TPR_15
ARM_TT21_C
NRDE-2
TPR_16
ARM_TT21
TPR_1
Tcf25
LTN1_E3_ligase_6th
DUF4515
Motif
Other DBs
NCBI-GeneID:
127510115
NCBI-ProteinID:
XP_051745549
LinkDB
All DBs
Position
3:complement(40114178..40125252)
Genome browser
AA seq
849 aa
AA seq
DB search
MPTLSGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITDPAYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFGRNLPLPETAIRVFRRYLKLSPENAEEYID
YLRSVGRLDEAALRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQNEDEDIDLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTVDPVKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSRKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDRCPPKYAKTIYLLYAKLEEE
YGLARHAMAVYERATAAVEPEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRLTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNATGTVSDLAPGQSGVDDMRLLEQKAQQLAAEAEQ
DRPKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDEDEDAEDGEPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgcttagcgggaaggcagacgttttattcgaagatgatgatttgccttatgag
gaagaaatcatcaggaatccatattcagttaagtgctggatgcgttacattgagcacaag
caaaatgctcagaaatcagtgctcaatatgatatatgaaagagctttaaaagagctgcct
ggcagttacaagttgtggtacaactacctgagagagaggaggaaacaggttaaaggcaag
tgtatcacagatccagcatatgaggaggtgaacaactgtcatgagagagcacttgtgttt
atgcataagatgccgaggatatggatcgactactgtcagttcatggtgtctcaatgcaaa
attacacggagccgacggacgttcgatagggcgttacgagcgctgcccgttactcaacat
cctcgcatctggcccttgtatcttcgctttggccgtaacttgcctctcccagaaacagct
attcgtgttttccgtcgttacctaaagttgtctcctgagaatgcagaggaatacatcgat
tacctgcgttcagttggacgtctggatgaagctgcactccgactggcagctgtggtcaat
gatgaaaactttgtttctaaagagggaaagtccaattatcagctttggcacgagctctgt
gacctcatctcacaaaacccggacaaggtgacatcactgaacgtgggagcgattatccga
ggaggtctcacccgctttactgaccagcttggcaaactctggtgttctctggctgattac
tacatccgcagtggccactttgagaaggctcgagatgtgtatgaggaagccatcctaact
gtagtcactgtgcgagacttcacccaggtttttgacagctatgcacagtttgaagagagt
atgatcgctgccaagatggagaccacatcggaactgggacaaaatgaagatgaagacatt
gacttggagttgcgattggctcgtttcgagttgctgataacacgacggccgctcttatta
aacagtgtgctgctccgtcagaatcctcacaacgttcacgagtggcacaagagagtcaaa
ctctacgagggccaacctcggcagatcatcaacacatacacagaggcggtgcaaacagta
gatcctgtgaaagccacaggaaagcctcacagtctctgggtgtccttcgccagattctat
gaggataacgaacagctagatgatgctcggactatctttgagaaggccacaaaggtgaac
tacaaacaggtggatgatcttgctgcagtgtggtgtgagtatggagagatggagctgaga
catgagaactatgaccaggctttgcgtatactaaggaaagcaacagcgattccatcaaga
aaagcggagtactttgacgcatcagaaccggtgcagaatcgagtatataaatccctgaaa
gtttggtccatgcttgccgacttggaggagagtcttggcacattccagtccacaaaggca
gtgtatgatcgcatcattgatctccggatcgccacgcctcagatcatcattaactatgcc
atgtttcttgaagaacacaactactttgaagatagcttcaaggcatatgagcgcggcatt
gccctctttaagtggcctaatgtccatgatatctggaacacgtacctcactaagttcatc
gaccgttatggaggcaagaagctggagagagcacgagatctgtttgagcaagcgctggat
aggtgtcctcctaaatatgccaaaacaatctacctgctgtatgctaagctggaagaggag
tacggcctggcgcgacatgccatggctgtgtatgagagagccactgcggctgtagagcca
gaggagcgccatcaaatgttcaacatctacatcaaacgggcagcagagatttatggagtc
actcacacaagagccatctatcagaaagccattgaggtcctgccagatgaacacgccaga
gacatgtgcctgcgcttcgctgacatggagagcaaacttggagagattgacagagcgaga
gccatctactcttactgctctcagatctgtgatccaaggttgaccgctcatttctggcaa
acctggaaggagtttgagattcgccacggaaatgaggacaccatccgtgagatgctgagg
attaaacgcagtgtgcaggccacatacaacacacaagtcaacttcatgtcctctcagatg
ctcaaggcaaccactaatgctactggaacagtgtcagatcttgctccggggcagagcgga
gtggatgacatgaggctgctggagcagaaggctcagcaactggcagcagaggctgaacag
gacagacccaaacctaaagacaagatccttttcgtcagaagtgacacctctcgcagtgaa
ctcgccgaactggccaagcaagctaatccagatgagattgacattgatgatgatgaggat
gaggatgcagaggatggagaaccagatgaagtccagttggagcagaagtctgtccctact
gctgtcttcggaggactaaaggacgactga
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