Ctenopharyngodon idella (grass carp): 127510437
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Entry
127510437 CDS
T08802
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cide03016
]
127510437
Enzymes [BR:
cide01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
127510437
Transfer RNA biogenesis [BR:
cide03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
127510437
Prokaryotic type
tRNA splicing ligases
127510437
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
127510437
NCBI-ProteinID:
XP_051745909
LinkDB
All DBs
Position
4:16786428..16792281
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AA seq
505 aa
AA seq
DB search
MSRTYNDELQYLDKIHKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMENPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIFND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcacttataacgatgagcttcagtatctggataaaatccacaaaaactgctgg
cggatcaagaagggcttcgtgcctaatatgcaggtggagggtgttttctacgtcaatgat
cctctggagaaactgatgtttgaggagctgagaaacgcctgtcgtggtggagggtttggt
ggtttcttacctgctatgaagcaaattggaaacgtcgccgccctgccgggaatcgtacat
aggtctatcggcttacccgacgtccactctggatatggttttgccatcggaaacatggct
gcatttgacatggaaaacccggatgctgtggtctctcccggtggtgtcgggtttgacatc
aactgtggcgtgagactgctgcggacgaacctggatgagggcgacgtgcagccggtgaag
gagcagctggcgcagtccatgtttgaccacattcccgtcggagtcggatccaagggcgtc
attccgatgggagcaaaagatctggaggaagctctagagatgggtgttgattggtccctg
agggaaggatacgcctgggccgaggataaggaacactgtgaggaatacggccgaatgctg
caggccgatcccaacaaagtctcatccaaagccaagaagagaggactgccacagttggga
acgttgggtgcaggaaatcactacgccgagattcaggtggtggatgagatctttaatgat
tacgccgcaaagaagatgggcatcgaccacaagggccaggtgtgtgtgatgatccacagc
ggcagtcgaggcctcggccaccaggtggcgacagatgctttggttgcaatggagaaggcg
atgaagcgggacaagatcacagtgaatgaccgtcagctggcctgcgctcgcatcacgtct
cctgagggtcaggactatctgaagggcatggcggccgccggcaactacgcctgggtcaac
cgctcctctatgaccttcctcacccgccaggcgttctctaaagtcttcaacacaacccca
gatgacctggacatgcatgtcatctacgacgtctctcacaacatcgccaaggtggaggag
cacatggtggacggcaaacagaagacgcttctcgtgcacaggaagggctcgacgcgggcg
tttcctccacaccatccgctcatacctgtcgactatcagctaacgggtcaaccggttctg
atcggaggaaccatgggcacctgcagttatgtgctgacgggcacagagcagggcatgacg
gagacatttggcaccacgtgtcacggagcgggtcgagctctatccagagccaaatccaga
cgcaacttggacttccaggatgttctggataaactggcggacatgggcatcgccattaga
gtggcgtcaccaaagctggtgatggaggaggctcctgaatcctacaagaacgtcacagat
gtggtaaacacgtgtcatgacgccggcatcagtaagaaggccatcaagctccgacccatc
gctgtgattaaagggtaa
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