Ctenopharyngodon idella (grass carp): 127510514
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Entry
127510514 CDS
T08802
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03013
Nucleocytoplasmic transport
cide03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127510514
03015 mRNA surveillance pathway
127510514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127510514
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127510514
mRNA cycle factors
P-body specific factors
127510514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
127510514
NCBI-ProteinID:
XP_051746053
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All DBs
Position
4:16705096..16723920
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AA seq
1264 aa
AA seq
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MSSSMPAERKKSVNMEERETGSFSNKDRDADRPVAASREKSKDESKMSGKKDGGKTADDK
KRRAEEEKRKKEEKERKKKEEEKQKAEEEQRKKEEEEKRQQEEQEKKLLEEEAKRQKEEE
AAQLKEKEEADQLQQEAWERHHGRKELRAKNQHVQETRPEEAFFSRLDSSLKKNTAFVKK
LRTLTEQQRSSLSQDFDSLNLSKYIGEAVSSMVEAKLKISDVGCAVHLCSLFHQRYAEFA
PLLLAAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGA
DREMHTHVSVIISFCKHCGDDIAGLVPRKVKNAAEKFGLSFPPSQIINAEKQQPFQNLLR
EYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQTLA
DLLDENMPELPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAF
VPAILFKDNEKSSQSSKEGRAGNSTEELEMELEALDITDDPIDLDVADETENEELAKKLL
DEQEQEDEEASTGSHLKLIVDAFIQQLPNCINRDLIDKAAMDFCMNMNTKSNRRKLVRAL
FTVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVR
FIGELAKFKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPDSHLRTSVLL
EQMMRKKQAQHLDVRYVTMVENAYYYCNPPPMEKTVRRKRPPLQEYIRKLLYKDLSKVTT
EKVLRQMRKLPWHDADVKSYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDG
VLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVNTDGSPS
PLDPPEHLFRIRMVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYIWWKKSVDVWTKDQPF
PIDIEYMITDTLELLRPKMKLCSSLEEACAHVTQLEREFLVKLGLEKDGRSSSAMDENEP
LDEEDDDDEDEGGAETEEQSGNESEMNEPEEEEGSENEEEEREEEEENTDYLTDSNKENE
TDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEVVKVHQLDVTIPLQLK
SQLKKSPAPSCTADADISDTMQFVMLTRKGNKQQFKILNVPLSSHLAANHFNQQQAEQEE
RMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTG
GRRR
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcagtatgcctgctgaacgcaagaagtctgtcaacatggaggagagagagacg
ggctccttcagcaacaaggacagagacgctgacagaccggtcgccgcgtcccgcgagaag
agcaaagacgagagcaagatgagcgggaagaaggacggaggcaagacggccgacgataag
aagagacgggctgaggaggagaagaggaagaaggaggagaaggagcgaaaaaagaaagag
gaggagaagcagaaagcagaggaggagcagaggaagaaagaggaggaggagaagagacag
caggaggagcaggagaagaagctgctggaggaggaagccaaacgacagaaagaggaagag
gctgcgcagctgaaggaaaaggaggaggcggatcagctccagcaggaggcgtgggagcga
caccacggcaggaaggagctgcgagcgaaaaaccagcatgtgcaggagacgcgtccggag
gaggccttcttcagccgcctggactccagcctgaagaagaacacggccttcgtcaagaag
ctccgcacgctcacggagcagcagcgcagctcgctgtcgcaagacttcgactcgctcaac
ctcagcaagtacatcggcgaggccgtgagctccatggtggaggccaagctgaagatctca
gacgtgggctgtgccgtgcatctctgctccctgttccaccagcgctatgccgaattcgcg
ccgctgctgctggctgcctggaagagacacttcgaggccaggaaggaggagaaggcacct
aacgtgagcaagctgcggaccgacctgcgcttcatcgccgagctcaccattgtgggcctg
ttcaccgataaggaggggctgtcgctcatctacgagcagctgaagaacatcatcggtgcc
gaccgagagatgcacacacacgtttctgtcatcatcagcttctgcaagcactgcggagac
gatatcgccgggctggtgccgcggaaggtcaagaacgcggctgagaagttcggcttgtcg
ttccctcccagccagatcatcaatgcagagaaacagcagccgttccagaatctgctgaga
gaatatttcacctccctcaccaaacacctgaagaaagaccaccgagagctgcagaacatc
gagagacagaacaggcgtatcctgcactctaaaggagagctcagtgaggacagacataag
cagtacgaggagtttgccacctcttatcagaagctgctggcaaacactcaaactctggcc
gatctgctggacgagaacatgcctgaacttcctcaggacaaaactgtccaggaagaacac
ggtcctggcatcgatatcttcacaccaggaaaaccaggagagtacgatctggaaggcggc
atctgggaggacgaggacgctcgtaacttctatgagaacatggtggatctgaaggcattt
gtacctgccattctcttcaaggacaatgagaagagcagccagagcagcaaagagggacga
gcgggaaacagcaccgaggagttggagatggagttggaagcgctggacatcacggatgat
ccgatagatctggatgtagccgacgagactgaaaatgaagaactggccaaaaagttactg
gatgagcaagagcaggaggatgaggaggccagcaccggctctcatctcaaactcatcgtg
gacgcttttatccagcagctgccaaactgcatcaacagagacctgattgacaaggctgct
atggacttctgtatgaacatgaacaccaagtccaatcgtaggaagctggttcgtgctctc
ttcacagtgcccagacagaggctggatctgttgccgttctacgctcgtctggtggccacg
ctgcacccgtgcatgtctgatgtggcggaagatctctgctcaatgctcaaaggagatttc
agatttcatatcagaaagaaggaccaaatcaacatcgagaccaagaataagacggtgagg
ttcatcggggagttggccaagttcaagatgttttccaaaacggacacgctgcactgtctc
aagatgctgctgtctgatttctctcatcatcatatcgagatggcctgcacactgctggag
acctgtggacgcttcctcttccgttcaccggactctcacctgcgcacaagcgtcttactg
gagcaaatgatgcgtaagaaacaggctcagcatctggatgtgcgttacgtgaccatggtg
gagaacgcctattactactgtaaccctccgccgatggagaagacggtacgcaggaagaga
cctccgctgcaggagtacatccgcaaactcctctacaaagacctgtccaaggtcaccact
gagaaggtgttgaggcagatgagaaagttgccctggcatgacgctgatgtcaagagttac
ctgatctgctgtatggtcaacatctggaacgtcaagtacaacagcatccactgcgtggcc
aacctgctggccggactggtggcgtatcaggaggacgtgggcattcatgtggtggacgga
gtgctggaagacatccgtctaggcatggaggtgaaccagcccaagtttaaccagcggcgg
atcagcagtgctaagtttctgggtgagctgtataactaccgtatggtggagtccgccgtc
atcttccgcactctcttctccttcatctcattcggcgtgaacacggacggttctccgagc
ccgctggacccgcccgaacacctgttccgcatccgtatggtctgcaccctgctggacacc
tgtgggcagtacttcgaccgcggctccagcaagaagaagctcgactgcttcctcatttac
tttcagaggtacatctggtggaagaagagtgttgatgtgtggactaaagatcagccgttc
cccatcgatattgagtacatgatcacagacacgctggagctgctgcggcccaagatgaag
ctgtgctcgtctctggaggaggcctgtgcgcacgtcacacagctggagagagagttcctc
gtcaaactgggcctggagaaagacggccgctcctccagcgcgatggatgagaacgagcct
ctggatgaggaagatgatgatgatgaagacgagggcggagctgagaccgaggagcagtct
ggaaacgagagcgagatgaatgaacccgaggaggaggagggctcagagaatgaggaagag
gagcgtgaggaggaagaggagaacacagactatctgaccgactccaacaaagagaacgaa
acggacgaagagaacaatgaggtcacgatccgcggcggaggactcaaacatgtggcgtgt
gcggaggacgaggacttcatccaggcgctggacaaaatgatgctggagaacctgcagcag
cgcagtggagaggtggtgaaggtccaccagctggacgtaaccattcctctgcagttaaag
agccagctgaagaaaagccccgccccctcctgcactgcagacgcagacatcagtgacacc
atgcagttcgtcatgctcacacggaagggcaacaagcagcagtttaagatcctgaacgtg
ccgctgtcgtctcatctggcggcgaatcacttcaaccagcagcaggcggagcaggaggag
cgcatgcgcatgaagaagctgacgctggacatcaacgagcgacaggaacaggaagactat
caggaaatgatgcagtctctcgctcagagacccgcacccgccaacaccaaccgagagcgc
cgcccgcgctaccagcaccccaaaggagccccgaacgctgacctcatattcaagaccggc
ggcaggagacgctga
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integrated database retrieval system
