Ctenopharyngodon idella (grass carp): 127510729
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Entry
127510729 CDS
T08802
Name
(RefSeq) LOW QUALITY PROTEIN: small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cide03009
]
127510729
Ribosome biogenesis [BR:
cide03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
127510729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
DUF4058
Motif
Other DBs
NCBI-GeneID:
127510729
NCBI-ProteinID:
XP_051746612
LinkDB
All DBs
Position
4:complement(10895577..10923091)
Genome browser
AA seq
2789 aa
AA seq
DB search
MKLKAKPQSHKSENTYRFVTFSERLAKVNIDVIHRIDRTGSYAEEVETYFYEALVKWKDL
NLTDHFMKFFREVLSKSQSFNMLVFHQSAIVESLKTYLSVKNNMAYQPLLDLVIQLARDL
QIDFYPHFPDFFVIITSILDTQDTEVLEWAFTCLSYLYKYLWRKMVKDMDKIYSLYSRLL
AHKKDHIRNFAAESFSFLMRKVTDYDALFTLIFADLAKHPQKARGAGQLIFEMCRGVRNM
FHSCASTALPVVLQKLGPAVGQDVELPWDSIKEALDHMAKSSANYVHKEHLLVLWDSLEG
SLKEVLGKIETSNADSANEHLERILYIYHTLVEHRKGEKITKPQSVCETLLQLVQAPGLS
YTCSRLLLQVVTALLMGENLSLPASSIHELVKKVFHSGMDRDLILSFTKDMFDMKQFEQL
FLPSLLQYLEQLFCTEDAVNQQLVLELLVGLILSKAPPPTDGSMAFEKYPLVFTGQTVRS
TGPEKDQSVSVPQRILSLIDIPIDQPLSDLSHPWAALVLLPHIRPLEASSVIQVVTALLN
RLLQEVCSETLGKGGLFVARQALSTLLSFKETTAVQSLLPVELVRNIIQKLPTDLSALLL
GDLYYTRLALSGCSAQLSHDSLLELCNILHSNFSSNISKIRLLTLRILSNFEADLPKPAE
GEESSNAQTVFAVCLQAEQVPATVQDYREKLLHLRKLRHDLVQHCLPNGPFHEVPLRYLI
AMLFVNFRPLWDAVIELLVSHAKEMDNKSFWSVYYEHLEMVAGLAEEELQADDDDDDDDD
EGGDGKHQATKQLRGPGTSVIESGDVGVVFLEELDQVLNPTERTDFTNFRDLLWQAMSKF
PERVEPRSRELSPLLLRFISNEFYPSDLLMAPTQDLMKKSSSSSEQEMAEDVDAEMEEDE
EKEEDSKQSKKKMPRRAAAKQLISHLKVFSKFTNPKALYMEANLSELYTQLLCHKDQQIQ
KIALDCLMTYKDPNILPYKENLVRLLDDKHFKDEIVHFNIAEEGAVVLSSHRPQFIPMLM
RILYGRMCTRVGNRFQGKASSSSRSSIVLRFLAGCLPEEMGMFIDLLLEPVRHHAEGTCL
AAVDRAIGETNLSSVLPLGRQHSLLNTIELLIKKLGHLIQIYLPKVLQILLCITASVSFV
LDRREQLKPGCINPLKNLRRLGILRIKDFFDGFECYNFTADELDAVFQAMVWPQVCRLPT
ESTYAPTPLLKVIHVWTQNARFFPLLAKQRPGHPECDVLLNVFALLSSKNASAITVAMVM
DIAESLLTTPDFEPKENETELIVNDCVIPESCDVSDPLTIGCRLLLPHIPALLQYLGGVV
RNSERLKKKKFRAQVSKELNILSKISRFVTEKGQSTTLTGLLLPYLHKPKTAQETELDIL
GTVQNLLRQCSEPSVFLKPLSKLFAIIHNRLSRQALCEAFQALSDMDSELKYITDIVIEL
NAFDSRHLDEIHFDVRLMAFQKATKHIKEMSTLDMRYLTVVMHNCFHSLEIGDMSLADSA
TMCLSAIITHLSEIGCPEAEYKEIVQYVILDALRKGLKSKTESVRNEYTTVLACLVKTFP
NRSEFRDLVQLTDYNDLESDFFEHMKHIQVYRRGRALRKFARQLTEGEIVMSSRSMQNYI
MPYAMIVLVDEKLLKYEPMKTAAIEVIGAVCRRLTWSKYLFYVKHFVHILQSGIAEQKLA
VSLLLTVLDAFHFDHETLSKEIEVAKNRETEELSVVVEEAVDEAAETMDTDESDAEDVME
TDEAGAAVSTAVDAEMECPAKPEGKDTQVKKVPPAVNSGLPQSKQGLEALISSIHHTLTQ
TVLPKLHKCLTAKVKRDDEHKMVKSKEVKDDEVARVPIAFAMVQLMKSLPKDVMEANLPG
ILLKVCVHLRSRFQEIRDVARNTLVKIIETLGPQYLHYLLNEMQAVLVKGYQVHVLXFTV
YHLLTVLKPSLTAGDLDPCMDMLITIFNNELFGAVAEEKDIKGIVSKVMEARHSKSSDSY
ELLGQFCSQERVIHLILPLKEVLENTTSLKVSRRVHAVLKRIVMGLLLNQSMSPQSILLL
CHGLISQSLPLITSKNKEKHHPPPDPRLPPPSCLLLPATPKRVGVKAAISSKTNMHILVE
TGLSLLHCSLKTSKINSSCPSVKEMLDPFVSLLLDCLNSMHVKVITEALQAFIWILKFPL
PAVEQNYDQLTKQLFVLLKDYARAGAARGENFLLVQNCFKAITVLVQSARKQISETQLQV
LLGYAEEDIYDNSRRATAFGLLKAILSRKLVVPEMEDVMKKVAKFAIDGSNEEVRLRCRQ
IYLKYLMDYPLGKKLRKHLDFIVAQLSYEYDTGRQSALELMAYIFQKFPQALLHEHCGLF
FVPLSLVILNDDSASCKKMAALAVKSLLKELNLQYQNNMFNLVNSWITGEKMAMRRLGAQ
VCGLFVEVQGAKFSRRLDVLIPLIEKEIHTSNFEDIEEEEDEKAADRLLFCYLTLIVKLI
KDCSFLELHKPADLLNNIWGHIYSHLRYPHSWVWLTASQIFGLLFAAHKPEDLLALWSSQ
GNKTTHPVATVFLTDDLYQKMRELVLSFCYQLQSKFLDISAGEQVVKNLIYVAKVIFLIS
PESDTVNPTEEQEEVEGAEEETTDKTEGNEEEDKEQKNKPASLLWVMKKLSLLAKREAAD
TPKVPLKRTCVFKFLGAMAVDLGKDRIGPYLTTIIAPLYRELDSTYADQDPTLKNLAQEL
IELLKKLVGLERFSLAFVAVQKEASQRRASRKKVKALQAVVNPDIAARNKIKKQLKKNEA
KKRKIEFVRTGHKAKKHKRSSLKDLAMIS
NT seq
8370 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttaaagccaagccccaatctcataaatcagaaaacacataccgctttgtcacg
ttttctgaaaggctcgcaaaagtaaacattgatgtcattcatcgcattgacaggactgga
agttatgctgaggaggtagaaacctatttttatgaagccctggtaaaatggaaagactta
aatttgacagaccacttcatgaagttttttcgagaggtgttaagcaagagtcagtctttc
aacatgctggtgtttcaccaaagcgccattgtggagagtctgaagacctacctttcagta
aagaacaacatggcttaccagcctcttctggatcttgtaattcaactggctcgggacctc
cagattgacttttacccacacttccctgacttcttcgtcatcatcacatctatactggac
acacaagacactgaggtgttggaatgggccttcacttgtctgtcgtacctgtacaaatac
ctgtggaggaagatggtgaaggatatggacaagatatacagtctttacagtagacttctg
gcgcacaagaaggatcacatccgcaactttgctgccgagagcttctcttttttgatgaga
aaggttacagattatgacgcgctcttcacgctcatattcgccgacctggctaagcatcct
cagaaggccagaggagccggtcagctgatctttgagatgtgtcgaggagtccgtaacatg
ttccactcctgtgcctctacggctcttccggtggtgttgcagaagcttggcccagcagtt
ggacaggatgttgaattaccttgggactctatcaaagaagctcttgaccacatggctaag
tcttcagccaactatgttcacaaagaacacctgctcgtcctgtgggactccttagagggc
tctctaaaagaagttcttggaaagatagagacaagcaatgctgactcggctaatgaacac
ttggagaggattctgtacatctaccacacacttgtggagcatcgcaaaggagaaaagata
acaaaaccacagtctgtttgtgagacacttcttcagctagttcaggcaccaggactgtcc
tacacctgctccaggctgcttttacaagtggtcactgctctgttgatgggggagaatctg
tcattacctgccagcagcatccatgaactggtgaaaaaggtcttccatagcgggatggac
agagacctcatattgtcatttacgaaagacatgtttgacatgaaacagtttgagcagctt
ttcttgcccagtttgctgcagtatctggagcagctcttctgcactgaggacgctgtgaac
caacagctggttctggaactgcttgttggtctgattctgtccaaagctccgccccccact
gacggctccatggcttttgagaagtacccattggtcttcactggacagactgtcaggtca
actggacctgaaaaagaccagtcggtctctgttccccagcggattctttctctcatagac
atccccatcgatcagccgctctctgacctttctcatccctgggctgcactagtgctcctc
ccacacatcaggccattagaagcatcaagtgttatacaagtcgtcactgcactactgaac
aggttgctgcaggaggtgtgcagtgaaactctagggaaaggagggctgtttgtagccaga
caggctctaagcactctactcagcttcaaggagactacagcggtacagtcactcctgcca
gtagagctggtcagaaacatcatccagaaacttcccactgatctttcagcgctgctgtta
ggagatctgtactacacaagactggcactcagtggctgctcagctcagctgtcccatgat
tctctgctggaattgtgcaatatactgcattccaatttttcttccaacatttctaagatt
cgtttgctgaccctcagaatattgtcaaactttgaggctgatcttcctaaaccagcagag
ggagaggagagctcaaatgcgcagacggtgttcgccgtgtgtctgcaggcagagcaggtc
ccagccacagtgcaggactacagggagaaactactacaccttcgtaaactccgtcatgac
ctggtgcagcactgtctgcctaacggacctttccatgaggttcctcttcggtatcttatt
gcaatgctgtttgtcaatttccgacctctttgggatgctgttattgaactgttggtgtcg
cacgctaaagaaatggacaacaaatctttttggagtgtttattatgaacatctggagatg
gttgctggtctagctgaggaagagctccaggcagatgatgatgatgatgatgacgatgat
gaaggaggtgatggaaaacatcaagccacaaagcagctcagaggtccagggaccagtgtg
attgagagcggtgacgtgggagttgtgtttctggaagagctggaccaggtgctgaatccc
actgagcgaacagacttcacaaacttccgtgacttgctttggcaagccatgtctaagttt
cccgaaagagtggagccacgtagccgagagctcagcccattactgctgcgcttcatcagt
aatgagttctacccatctgacctgctaatggctcccactcaggacctcatgaagaaaagc
agctcttcatcagagcaggaaatggctgaagatgtagatgctgaaatggaagaagatgaa
gaaaaggaggaagattccaaacaatccaagaaaaagatgccaagaagagcagcagccaag
cagctcatttctcacttaaaggtcttctccaaattcaccaacccaaaagctttatacatg
gaggcaaatctgagtgagctgtacacccagctcctgtgccataaagatcaacaaatccag
aaaatagcacttgactgtttgatgacatacaaagacccaaatattctcccttacaaagag
aatctggtgagacttctggatgacaagcattttaaagatgagattgtccatttcaacatt
gcagaggaaggagctgtggtactttcgtcacacagaccccaattcattcccatgcttatg
aggatactgtacgggaggatgtgcactagggttggtaataggtttcagggtaaggcgagc
tcgtcttcacgctcctccatagtgctgcgcttcctggcaggctgtctgccagaggagatg
ggcatgtttatagatcttctgctggagcctgttcgtcatcatgctgaaggaacgtgtctg
gctgctgttgatcgagccataggtgaaacgaacctgtcttctgttctccctctgggtcgc
cagcacagcctgctcaacaccatagaattgctcatcaagaaactaggacatctcatccaa
atctacctgcccaaagttttgcagatcttgctgtgcatcacagcctctgtgtcatttgta
ctggatcgcagagagcagctcaagcctggttgcatcaatcctctgaagaacttgcgtcgt
ctggggattctgcgcataaaagacttctttgatggctttgagtgttacaacttcactgca
gatgagctggacgctgtcttccaagccatggtgtggcctcaggtgtgccgtttgcccact
gaaagcacgtatgcaccaacgcccctcctgaaagtcatccatgtgtggacccaaaacgct
agatttttcccgttgcttgctaagcagagacctggccaccctgagtgtgatgtcctgctc
aatgtttttgctctgttatcctccaaaaatgcgtctgccatcacagtggccatggtgatg
gacatagccgagagcttgctgaccactccagactttgaacccaaggagaatgagacagag
ttgattgtgaatgactgtgtgatccctgaaagctgtgatgtatcagatcctctgactatc
ggctgccgtctgctacttcctcacatcccagcactactgcagtacctcggcggagttgtg
cgcaactctgaacgcctgaaaaagaagaaattcagagctcaagtcagcaaagagctcaac
atcctttcaaagatcagcagatttgtgactgaaaagggacagagtacaacactaactggt
ttgcttctaccttaccttcacaaacccaaaaccgcacaggaaaccgagttggacatcctg
ggtactgtgcagaacctgctgagacagtgttcagagcccagcgtgttcctcaagcctctc
agcaaacttttcgccatcatccacaacagactttcacgtcaggctctgtgtgaagcgttc
caggctctgtcagacatggacagtgaactgaagtacatcacagacattgtcattgagctc
aacgcatttgacagccgccatctggacgagattcactttgacgtgcgtctcatggcattc
cagaaggctaccaagcacattaaagagatgagtacgctggatatgagatacctgaccgtt
gtcatgcacaactgcttccattcattagagatcggtgacatgtctctggcagacagtgcc
accatgtgtttgtcagccataataacgcatctctcagaaatcggatgcccagaggccgaa
tacaaggagattgtgcagtacgtgatactggatgcactgcgaaagggtttgaagagcaag
actgagagtgtacgaaatgaatacactacggttctggcctgcctggtgaagacatttcca
aaccgatcagagtttcgtgatctggttcagctgacagattataatgatctcgagtcagat
ttctttgagcatatgaagcacatacaggtttacagaaggggtcgagcactcaggaagttt
gccaggcagctgactgagggcgagattgtgatgtcatcacgctcaatgcagaattacatc
atgccctacgccatgatcgttctagttgacgaaaaactgttgaagtatgagcccatgaaa
acagctgccatagaagttatcggtgccgtgtgcagacgcttgacctggtccaagtacttg
ttctacgtcaaacactttgtccatattttacagtctggaatagctgagcaaaaactggct
gtcagtttgttgctgactgttcttgatgcgttccactttgaccatgagactctcagtaaa
gaaatcgaggtggccaaaaacagggagacagaagagctcagtgttgtggtggaagaggct
gtggacgaggcagcagaaaccatggacacagatgaaagtgatgctgaagatgttatggaa
actgatgaggctggagcagccgtttccactgcagtggatgctgagatggaatgccctgcc
aaaccagaaggcaaagacacccaagtgaagaaagtgcctcctgctgtcaacagtgggctt
ccacagagtaaacagggtctagaggcgctcatttcctccattcatcacacgctcactcag
actgtcctgcctaaacttcacaagtgcctcactgcgaaggttaagcgagatgacgagcac
aagatggtgaagtctaaggaggtgaaagatgatgaagtggccagagtgcctattgcattc
gccatggttcaactcatgaagtctctgcctaaggatgtcatggaagcgaacttgccgggc
atccttctgaaagtgtgcgtccacctgaggagccgtttccaggagatccgtgatgtcgct
cgaaacactttggtgaagatcatagagacacttgggcctcaataccttcattatctgctc
aacgagatgcaggcagttttagtgaagggatatcaggtccatgttttgnacttcacagtg
taccatttgcttactgtcctaaaaccatctttgactgctggggatcttgacccatgcatg
gacatgctcattacgatcttcaacaacgagctgttcggagctgtagccgaggagaaggac
atcaaaggaatagtttccaaggtgatggaggcccgtcatagcaaaagctcagactcgtac
gagctgctcggccagttctgcagtcaggagcgcgtcatccacctcatcctgccactcaaa
gaggtgcttgagaacacgactagtttgaaggtgtcaaggcgagtgcatgctgtgcttaag
aggattgtgatgggacttttgctcaatcagagcatgagccctcagtccatcctactgctc
tgccacggactcatcagtcaaagtctcccgctcattaccagcaagaacaaagagaagcat
catccacctccagaccctcgcctgcctccgccaagctgtttactgctgcccgccactcct
aagagagtaggggtgaaggccgccattagtagcaaaacaaacatgcacatcctggtggaa
acgggtctcagtttgcttcactgtagtctgaagacttcaaagatcaactcatcttgcccg
tcagtaaaggagatgttggatccttttgtctctctcctcctggactgtcttaactccatg
catgtcaaggtgattaccgaggctctgcaggccttcatctggatcttgaagtttcctctg
ccggcggtggaacagaattacgaccagctgaccaagcagctctttgtcctgctgaaggat
tacgccagagctggagccgcccgtggcgagaacttcctcctggttcagaactgctttaag
gccataactgttttggttcagagtgcgagaaaacaaatatcagaaactcagctgcaagtg
cttctgggatatgctgaggaggacatttatgataactctcggcgagccacagcattcggc
ctcctgaaggcgattctttccaggaaactagtggtgccggagatggaggatgttatgaaa
aaagtggccaagtttgccatcgacgggtcaaacgaagaggttcgcctgcgctgcagacag
atctacctgaagtatctgatggactatccactggggaagaaactgaggaaacatcttgac
ttcattgttgctcagcttagttatgaatatgacactgggagacagtctgcgcttgagttg
atggcttacattttccagaaatttcctcaggctctcttgcacgagcactgcggtttgttc
tttgtgcctctgtcattggtcatattgaacgatgattctgcgtcctgtaagaaaatggcg
gctctagccgtcaagtctctgctgaaagagttgaatttgcagtatcaaaataacatgttt
aacctggttaacagctggattacaggcgagaagatggctatgcggaggctgggagctcag
gtttgtgggctgtttgtggaagttcaaggggcaaagttcagccggagactggatgtcctg
attcctctcatcgagaaagagatccacacttccaactttgaggatattgaggaagaggag
gatgagaaggctgctgacagactgctgttctgttacctcacgctcatcgtcaaactcatc
aaagactgcagctttttggagctccacaaacctgcagacctgctcaacaacatctggggt
catatttattcccatctgcgttaccctcattcgtgggtgtggctgaccgcctctcagatc
tttggtttgctgtttgctgctcataaacctgaggatctgttggccttatggagttctcag
gggaataaaaccacacaccctgtagccaccgtttttctcacagacgacctgtatcagaag
atgagagagctggtcctgtccttctgttaccaactgcagtccaagttcttggatatttct
gctggggagcaggtggtgaagaacttgatttacgtggccaaggtgatcttcctcatctca
ccagagtctgataccgtgaatccaactgaagaacaggaggaggtagagggtgcagaggaa
gaaacgacagataaaacggaggggaatgaagaggaagataaggagcagaagaacaagcca
gcgtctctcctctgggtgatgaagaagctttcattactggccaaaagagaagcagcagac
acacctaaagtgcctttgaagagaacttgtgtttttaagttcttgggagccatggctgtg
gatctcggaaaggaccggattggaccatatctgaccactatcattgctcctctctacaga
gagctggacagcacatatgcagaccaagaccccacactgaagaacctggctcaggagttg
atcgagctgttgaagaagctggtcggtctggagcgattctcactggcttttgtcgcagtg
cagaaagaagccagccagagacgtgcttcacgcaagaaagtcaaggccttgcaggctgtt
gtaaatcctgacattgccgccagaaataagataaagaagcagctaaagaaaaatgaggcc
aaaaagaggaaaatcgagtttgtgcgtacaggacataaagcaaagaaacataaacgcagc
tcactaaaggacttggccatgatcagttga
DBGET
integrated database retrieval system
