Ctenopharyngodon idella (grass carp): 127510774
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Entry
127510774 CDS
T08802
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cide03000
]
127510774
Transcription factors [BR:
cide03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
127510774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
MATalpha_HMGbox
AAA_23
Motif
Other DBs
NCBI-GeneID:
127510774
NCBI-ProteinID:
XP_051746738
LinkDB
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Position
4:7545939..7756812
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AA seq
763 aa
AA seq
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MLTEPELPQEFNRMSSKRPASPYGGTDGEVVMATSRQRLEDEEVDGHAVIHLPLSSYCSK
VSPRSPRLLDSPPTLHANMDQDGCKGLALSPYPQHNSSTSPSKQQQEEGSMRPGSEPSSA
SALGTPERRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKDKLLAMGSGNFG
EIKGTPDSLAEKERQLMGMITQLSSLREQLLAAHEEQKKLAASQIEKQRQQMELAKQQQD
QIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAAQQGFLLPPGF
NYKPGCSDPYPLQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGAKHSTVPQAN
LATGTLSPTSGQSEKNRSTPPPKPKDEGAQPLNLSSKPKASESKSPTSPASPQVPALKLG
PGSLKHSAPSSIGGPPSRLSSIDLLSSITSGGYLNDHEAVTKAFQEARQMKEQLKREQQV
LDAKVAAVNSLSLNNGRSEKDKAALESLSQQLKQQSEESKFTHAMMDFGISGDSDGSPSV
SDSRIFREARGRGSSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAM
TNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMR
QYFTVGQQTQLPLSSAGVVYPGALSMAGMPSPQMPSEHSSMSSSPEPVPPTSQPSYLTHK
GEEPRVKEEELRMDDGNGDAYDDFDYEDDDGDYGSDSENHITQ
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgcttactgagcctgagcttcctcaggagtttaacaggatgtcttccaagcgaccagcc
tctccatatgggggaacagatggagaggtagtcatggcgacaagcagacagcgattggag
gatgaagaggttgacggacatgctgtcattcacttgcccctgagttcgtactgcagcaaa
gtgtctccgcgatctcctcgactgctcgacagccccccaacactacacgcgaacatggat
caggatggctgtaaaggcctggccctgagcccctacccccagcacaactcttctacctca
cccagtaagcagcagcaggaggaggggtccatgcggccagggagcgaacccagctccgct
tcagctctgggcactccggagagacgcaagggcagcctggccgacgtggtcgacacgctc
aaacagcgcaagatggaggaactcatcaagaatgagccagaagaggccccaagtattgag
aggctgttgtctaaggactggaaggacaagctattggccatgggttctggcaactttgga
gagatcaaaggcaccccggacagcctggcggagaaagagcgccagctgatggggatgatc
acgcagctcagcagtctcagagagcagctactggccgcccatgaggagcagaagaaacta
gccgcttcgcagatcgaaaaacagcgccagcaaatggagttggcgaaacagcaacaggac
cagattgcacgacaacagcagcaacttctgcagcaacaacacaaaatcaacctcctgcag
caacagatccagcaggtccagggtcagttgcctccgctgatgatacctgtgtttcctcca
gatcagagaactctggcagccgctgcagcacaacaaggatttctacttcctccaggattc
aactacaaaccaggctgcagtgacccttaccctctacagctgatccccacaactatggca
gccgctgctgcggcaacacctggcctcggccctcttcagctgcagcagttgtatgcagct
cagttagctgccatgcaggtgtctccgggggccaaacacagcacagtgcctcaggccaac
ctggcaaccggaacactctcgcccaccagcggccagagcgagaaaaacagaagcacccca
ccaccaaagcccaaggacgagggcgctcagcccttgaatctgtcgtccaagcctaaggca
tccgagagcaagtcacccacctcccccgcttccccacaggtccctgccctgaagctgggc
cccgggtcactgaagcacagcgccccctccagcatcggaggaccgccgtccagactcagc
tccatagacctgctgtcgtctatcacctccggcggctacctgaacgaccatgaggccgtg
accaaagctttccaggaggccagacagatgaaagagcagctaaagagagagcagcaggta
ctggacgccaaagtagcggcagtcaacagcctgagcctcaacaatggacgctcagaaaag
gataaagctgctcttgagagcctaagccaacagttaaaacaacagtctgaagagagcaag
ttcactcacgcaatgatggactttggcatcagtggagattcagatggaagcccgagtgtg
tcggactcacggatcttcagagaggctcgagggcgtggcagcagcgaaccgcacatcaag
cggccaatgaacgcctttatggtctgggctaaagacgagagaaggaagatccttcaggcc
ttccctgacatgcataactcaaacatcagcaagattctcggttctcgttggaaggccatg
accaacctggaaaagcagccatactatgaagaacaggcccgtcttagtaagcagcaccta
gagaaatacccagactacaaatacaaaccacggcccaaacgcacctgcctggtggatgga
aagaaactgcgcattggtgaatataaagctatcatgcgcaaccgcagacaggagatgcgc
cagtacttcaccgtaggacagcagacccaattacccttgtcctcagcgggcgttgtgtac
ccgggtgcactctctatggcaggaatgccctctccacagatgccctctgagcactcgagc
atgtcgagtagccccgaaccagtcccgcccaccagccagccctcatacctcacacacaaa
ggggaggagcctcgtgtgaaggaggaggagctcagaatggatgacggcaatggcgacgcc
tacgatgactttgactatgaagacgacgacggagactatggcagtgacagtgagaatcac
atcactcagtaa
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